Hg_chrom8_TN10mRNA_15514
Organism: Heterodera glycines Gene Locus: chr8:4826487-4829754 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.051 | 1.121 | 0.876 | 0.9 | 1.071 | 1.081 | 0.884 | 0.904 | 1.249 | 1.248 | 0.852 | 0.472 | 1.45 | 0.772 | 0.779 | 0.918 | 1.053 | 1.4 | 0.463 | 0.532 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14654
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.296
|
0.038
|
0.710
|
0.152
|
0.292
|
0.169
|
0.056
|
0.223
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002494
|
3.000
|
1.000
|
Hsc_gene_6730.t1
|
— | — |
Q7ZVB2.1 4-trimethylaminobutyraldehyde dehydrogenase A [Danio rerio]
|
KAI1725294.1 aldehyde dehydrogenase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0016620
|
GO:0008150_0.806|GO:0005575_0.759|GO:0110165_0.752|GO:0003674_0.720|GO:0005622_0.646|GO:0009987_0.623|GO:0008152_0.622|GO:0005737_0.598|GO:0003824_0.592|GO:0044237_0.518|GO:0016020_0.510|GO:0016491_0.505
|
IPR015590+35-485+|IPR016161+32-490+|IPR016162+13-285_459-483+|IPR016163+286-376_377-458+|IPR029510+282-289+
|
— |
PF00171+35-485+Aldehyde_dehydrogenase_family
|
G3DSA:3.40.605.10:FF:000007+26-315+NAD/NADP-dependent_betaine_aldehyde_dehydrogenase
|
PTHR11699+30-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
54058.730
|
5.680
|
-4.500
|
22.490
|
9.438
|
44.378
|
55.622
|
11.245
|
11.245
|
54.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
111.198
|
13.014
|
15.720
|
11.870
|
12.774
|
16.523
|
203.592
|
202.091
|
31.688
|
284.380
|
176.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.634
|
3.505
|
— |
-3.264
|
— |
-4.181
|
— | — |
No JSON data available for plots.