Hg_chrom8_TN10mRNA_15516
Organism: Heterodera glycines Gene Locus: chr8:4833788-4836631 Feature type: polypeptideProtein Sequence
Length: 633
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.992 | 0.89 | 0.654 | 1.001 | 1.458 | 0.527 | 1.738 | 1.615 | 1.622 | 0.718 | 1.394 | 1.668 | 0.668 | 1.257 | 1.332 | 0.518 | 0.742 | 0.972 | 0.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14656
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.481
|
0.272
|
0.004
|
0.512
|
0.148
|
0.453
|
0.354
|
0.086
|
0.125
|
0.200
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002496
|
3.000
|
1.000
|
Hsc_gene_6728.t1
|
— | — |
Q9XWS2.2 Exocyst complex component 4 [Caenorhabditis elegans]
|
KAF7635930.1 Sec8_exocyst domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0090522
|
GO:0008150_0.953|GO:0009987_0.911|GO:0005575_0.720|GO:0110165_0.720|GO:0005622_0.676|GO:0016020_0.667|GO:0051179_0.655|GO:0006810_0.638|GO:0051234_0.638|GO:0051641_0.603|GO:0071944_0.568|GO:0005886_0.551|GO:0043226_0.545|GO:0043229_0.542|GO:0071840_0.517|GO:0005737_0.511
|
IPR039682+106-624+
|
— | — | — |
PTHR14146+106-624+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
633-633
|
1.000
|
1-632
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
71845.670
|
7.556
|
11.000
|
25.276
|
12.006
|
47.709
|
52.291
|
14.376
|
10.900
|
43.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
55.019
|
14.997
|
7.919
|
8.732
|
10.175
|
10.360
|
102.795
|
120.388
|
12.649
|
127.960
|
78.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.151
|
-0.917
|
— | — | — |
3.318
|
3.435
|
— |
-3.380
|
— |
-3.597
|
— | — |
No JSON data available for plots.