Hg_chrom8_TN10mRNA_15517
Organism: Heterodera glycines Gene Locus: chr8:4842760-4843809 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 0.75 | 0.953 | 0.695 | 0.739 | 1.861 | 0.576 | 2.419 | 1.971 | 1.962 | 0.733 | 1.423 | 1.568 | 0.465 | 1.152 | 1.382 | 0.793 | 0.367 | 0.0 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14657
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.510
|
0.212
|
0.006
|
0.520
|
0.162
|
0.435
|
0.514
|
0.052
|
0.200
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002496
|
3.000
|
1.000
|
Hsc_gene_6728.t1
|
Hsc_gene_6728.t1
|
— |
Q9XWS2.2 Exocyst complex component 4 [Caenorhabditis elegans]
|
KAI1718056.1 exocyst complex component 4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0090522
|
GO:0008150_0.950|GO:0009987_0.908|GO:0005575_0.771|GO:0110165_0.767|GO:0005622_0.730|GO:0016020_0.662|GO:0051179_0.644|GO:0051234_0.636|GO:0006810_0.630|GO:0071944_0.594|GO:0005737_0.574|GO:0043226_0.552|GO:0051641_0.549|GO:0043229_0.548|GO:0065007_0.540|GO:0071840_0.535|GO:0005886_0.530|GO:0050789_0.528|GO:0050794_0.516
|
IPR039682+42-239+
|
— | — | — |
PTHR14146+42-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-248
|
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
28192.580
|
8.102
|
8.000
|
25.000
|
12.097
|
50.000
|
50.000
|
15.323
|
9.677
|
39.919
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
8.068
|
0.906
|
0.314
|
0.570
|
1.179
|
0.752
|
0.000
|
1.935
|
0.514
|
32.792
|
18.958
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-4.975
|
-5.379
|
— |
-4.733
|
— | — |
No JSON data available for plots.