Hg_chrom8_TN10mRNA_15519
Organism: Heterodera glycines Gene Locus: chr8:4847831-4851117 Feature type: polypeptideProtein Sequence
Length: 509
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.051 | 1.142 | 0.857 | 0.881 | 1.113 | 1.058 | 1.006 | 0.884 | 1.135 | 1.221 | 0.833 | 0.462 | 1.637 | 0.793 | 0.842 | 0.814 | 0.998 | 1.34 | 0.453 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14659
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.368
|
0.071
|
0.677
|
0.256
|
0.342
|
0.150
|
0.079
|
0.213
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002494
|
3.000
|
1.000
|
Hsc_gene_6730.t1
|
Hsc_gene_6730.t1
|
— |
Q7ZVB2.1 4-trimethylaminobutyraldehyde dehydrogenase A [Danio rerio]
|
KAI1725294.1 aldehyde dehydrogenase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0016620
|
GO:0008150_0.807|GO:0005575_0.771|GO:0110165_0.757|GO:0003674_0.731|GO:0005622_0.646|GO:0008152_0.629|GO:0009987_0.620|GO:0003824_0.619|GO:0005737_0.611|GO:0044237_0.524|GO:0016491_0.514
|
IPR015590+35-496+|IPR016160+295-306+|IPR016161+32-501+|IPR016162+33-495+|IPR016163+271-465+|IPR029510+267-274+
|
— |
PF00171+35-496+Aldehyde_dehydrogenase_family
|
G3DSA:3.40.309.10:FF:000012+271-465+Betaine_aldehyde_dehydrogenase|G3DSA:3.40.605.10:FF:000007+26-300+NAD/NADP-dependent_betaine_aldehyde_dehydrogenase
|
PTHR11699+30-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-509
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
55318.040
|
5.690
|
-4.500
|
22.790
|
10.216
|
43.615
|
56.385
|
11.395
|
11.395
|
54.420
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
376.644
|
53.986
|
82.903
|
80.527
|
87.911
|
96.999
|
119.172
|
112.047
|
824.200
|
792.090
|
805.852
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.388
|
0.440
|
— | — | — | — | — | — | — | — |
-3.036
|
— | — |
No JSON data available for plots.