Hg_chrom8_TN10mRNA_15520
Organism: Heterodera glycines Gene Locus: chr8:4851647-4853947 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 0.758 | 0.692 | 0.843 | 1.042 | 1.533 | 1.52 | 2.31 | 1.51 | 0.624 | 0.7 | 1.439 | 1.208 | 1.881 | 1.276 | 0.854 | 0.624 | 0.659 | 0.0 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14660
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.885
|
0.083
|
0.002
|
0.515
|
0.053
|
0.046
|
0.032
|
0.001
|
0.050
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004742
|
2.000
|
1.000
|
Hsc_gene_6731.t1
|
Hsc_gene_6731.t1
|
— |
P91277.1 Heterogeneous nuclear ribonucleoprotein K homolog [Caenorhabditis elegans]
|
KAH7727575.1 Protein F26B1.2 c [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.898|GO:0009987_0.804|GO:0005575_0.788|GO:0110165_0.782|GO:0003674_0.762|GO:0065007_0.750|GO:0050789_0.748|GO:0005488_0.732|GO:0005622_0.692|GO:0050794_0.683|GO:0097159_0.633|GO:0008152_0.625|GO:0003676_0.618|GO:0044238_0.616|GO:0044237_0.609|GO:0043170_0.605|GO:0009058_0.600|GO:0009059_0.583|GO:0044249_0.583|GO:0019222_0.576|GO:0031323_0.571|GO:0010467_0.566|GO:0006139_0.563|GO:0060255_0.558|GO:0016070_0.556|GO:0090304_0.556|GO:0016020_0.545|GO:0009889_0.544|GO:0010468_0.544|GO:0010556_0.544|GO:0031326_0.544|GO:0005737_0.537|GO:0080090_0.531|GO:0043226_0.517
|
IPR004087+45-113_121-192_283-355+|IPR004088+49-108_125-187_286-352+|IPR036612+47-114_47-116_117-194_123-206_280-363_281-359+
|
SM00322+45-113_121-192_283-355+
|
PF00013+49-108_125-187_286-352+KH_domain
|
— |
PTHR10288+29-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;206-368
|
1.000
|
36-205
|
1j5k_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
40091.320
|
8.088
|
11.500
|
25.543
|
11.413
|
44.565
|
55.435
|
15.489
|
10.054
|
51.630
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
13.431
|
4.918
|
3.204
|
4.437
|
7.610
|
6.765
|
35.634
|
17.895
|
18.077
|
15.028
|
16.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.409
|
1.301
|
1.137
|
— | — | — | — | — |
No JSON data available for plots.