Hg_chrom8_TN10mRNA_15523
Organism: Heterodera glycines Gene Locus: chr8:4858496-4860932 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.421 | 1.264 | 1.219 | 0.625 | 0.755 | 1.812 | 0.755 | 0.996 | 1.087 | 1.175 | 0.741 | 1.492 | 1.459 | 0.941 | 1.035 | 1.449 | 0.921 | 0.961 | 0.836 | 0.906 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14663
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.376
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRIKVISKPSKKKLA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.732
|
0.177
|
0.009
|
0.575
|
0.207
|
0.142
|
0.101
|
0.031
|
0.148
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001425
|
4.000
|
1.000
|
Hsc_gene_6735.t1
|
Hsc_gene_6735.t1
|
— |
V6CLJ5.1 Suppressor of hairless protein homolog [Caenorhabditis elegans]
|
KAI1705474.1 beta-trefoil DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0001228|GO:0003677|GO:0003700|GO:0005634|GO:0006355|GO:0006357
|
GO:0008150_0.951|GO:0009987_0.898|GO:0065007_0.872|GO:0050789_0.863|GO:0003674_0.860|GO:0050794_0.848|GO:0005575_0.840|GO:0110165_0.840|GO:0005488_0.807|GO:0008152_0.799|GO:0043170_0.795|GO:0044238_0.793|GO:0005622_0.779|GO:0009058_0.777|GO:0044237_0.775|GO:0009059_0.767|GO:0044249_0.767|GO:0019222_0.762|GO:0031323_0.758|GO:0010467_0.753|GO:0016020_0.752|GO:0060255_0.751|GO:0080090_0.749|GO:0006139_0.745|GO:0009889_0.736|GO:0034654_0.736|GO:0031326_0.735|GO:0010556_0.733|GO:0010468_0.732|GO:0043226_0.732|GO:0090304_0.732|GO:0016070_0.727|GO:0141187_0.725|GO:0032774_0.723|GO:0043229_0.719|GO:0019219_0.712|GO:0051252_0.710|GO:0097159_0.709|GO:0006351_0.705|GO:0006355_0.702|GO:2001141_0.702|GO:0043227_0.699|GO:0003676_0.694|GO:0050896_0.691|GO:0048518_0.686|GO:0048522_0.679|GO:0043231_0.670|GO:0003677_0.668|GO:0003690_0.667|GO:0043565_0.667|GO:1990837_0.667|GO:0001067_0.665|GO:0051716_0.665|GO:0000976_0.664|GO:0009893_0.645|GO:0031325_0.639|GO:0010604_0.637|GO:0007154_0.632|GO:0009891_0.631|GO:0023052_0.630|GO:0031328_0.629|GO:0010557_0.627|GO:0007165_0.618|GO:0045935_0.614|GO:0006366_0.612|GO:0051254_0.611|GO:0006357_0.607|GO:1902680_0.607|GO:0045893_0.606|GO:0032501_0.602|GO:0032502_0.600|GO:0048856_0.600|GO:0045944_0.599|GO:0005634_0.594|GO:0000977_0.576|GO:0043228_0.566|GO:0043232_0.566|GO:0007275_0.565|GO:0048519_0.552|GO:0032991_0.546|GO:0140110_0.538|GO:0048523_0.537|GO:0003700_0.532|GO:0048513_0.518|GO:0007166_0.502
|
IPR008967+93-180+|IPR013783+395-536+|IPR014756+374-534+|IPR015350+194-368_222-341+|IPR015351+75-188_92-182+|IPR036358+192-373+|IPR037095+78-393+|IPR040159+93-538+
|
SM01267+75-188+|SM01268+194-368+
|
PF09270+222-341+Beta-trefoil_DNA-binding_domain|PF09271+92-182+LAG1,_DNA_binding
|
— |
PTHR10665+93-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
534-552
|
1.000
|
1-533
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
62302.150
|
6.289
|
-1.500
|
23.188
|
11.413
|
51.449
|
48.551
|
11.957
|
11.232
|
50.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
170.752
|
96.308
|
101.668
|
95.784
|
77.692
|
87.652
|
129.245
|
106.606
|
192.536
|
342.029
|
277.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.333
|
— |
0.571
|
— |
0.421
|
— | — |
-2.002
|
— | — |
No JSON data available for plots.