Hg_chrom8_TN10mRNA_15524
Organism: Heterodera glycines Gene Locus: chr8:4870371-4871372 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 1.19 | 0.716 | 1.493 | 0.591 | 1.615 | 0.562 | 2.559 | 0.612 | 1.17 | 0.954 | 1.158 | 0.984 | 0.606 | 1.687 | 1.069 | 1.355 | 0.656 | 1.514 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14664
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RRRK
|
80-121
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.552
|
0.332
|
0.045
|
0.487
|
0.028
|
0.028
|
0.074
|
0.145
|
0.048
|
0.342
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002491
|
3.000
|
1.000
|
Hsc_gene_6736.t1
|
— | — |
Q9VPT8.1 Cleavage and polyadenylation specificity factor subunit 4 [Drosophila melanogaster]
|
KAI1724906.1 zinc finger c-x8-C-x5-C-x3-H type (and similar) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270|GO:0046872
|
GO:0005575_0.619|GO:0110165_0.602|GO:0008150_0.589|GO:0003674_0.553|GO:0009987_0.535|GO:0005622_0.523|GO:0016020_0.503
|
IPR000571+26-44+|IPR001878+151-167_152-166_200-217_201-217_202-217+|IPR036875+187-217+
|
SM00343+151-167_201-217+
|
PF00098+200-217+Zinc_knuckle
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
227-254
|
1.000
|
1-226
|
8e3q_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
28759.750
|
10.339
|
24.500
|
27.165
|
11.811
|
54.331
|
45.669
|
19.685
|
7.480
|
50.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
12.430
|
7.027
|
4.928
|
5.567
|
4.970
|
2.615
|
37.817
|
43.773
|
3.751
|
11.555
|
8.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.861
|
3.953
|
— | — | — | — | — | — |
No JSON data available for plots.