Hg_chrom8_TN10mRNA_15525
Organism: Heterodera glycines Gene Locus: chr8:4876433-4877324 Feature type: polypeptideProtein Sequence
Length: 94
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.99 | 1.354 | 1.467 | 1.064 | 2.728 | 0.507 | 0.532 | 0.709 | 0.863 | 0.967 | 3.129 | 2.069 | 0.205 | 1.52 | 0.608 | 1.395 | 0.484 | 0.0 | 0.313 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14665
|
— | — |
1.222
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.326
|
0.706
|
0.079
|
0.316
|
0.091
|
0.347
|
0.414
|
0.023
|
0.123
|
0.458
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001424
|
4.000
|
1.000
|
Hsc_gene_6745.t1
|
Hsc_gene_6745.t1
|
— |
Q17754.1 Mitochondrial import inner membrane translocase subunit Tim9 [Caenorhabditis elegans]
|
KAF7640388.1 zf-Tim10_DDP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.915|GO:0008150_0.789|GO:0005622_0.765|GO:0009987_0.737|GO:0016020_0.719|GO:0043226_0.709|GO:0043229_0.695|GO:0005737_0.681|GO:0043227_0.642|GO:0043231_0.639
|
IPR004217+14-70+|IPR035427+1-88_15-76+|IPR050673+4-75+
|
— |
PF02953+14-70+Tim10/DDP_family_zinc_finger
|
— |
PTHR13172+4-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;89-94
|
1.000
|
4-88
|
7cgp_L
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
10893.340
|
6.901
|
0.500
|
28.723
|
9.574
|
56.383
|
43.617
|
14.894
|
13.830
|
44.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey60
|
492.478
|
254.499
|
336.813
|
622.692
|
655.846
|
485.710
|
390.573
|
301.954
|
635.578
|
534.875
|
578.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.174
|
1.154
|
0.995
|
— |
-0.418
|
-0.305
|
-0.787
|
0.512
|
— | — | — | — | — |
No JSON data available for plots.