SCN Proteipedia

Hg_chrom8_TN10mRNA_15527

Organism: Heterodera glycines Gene Locus: chr8:4878586-4879908 Feature type: polypeptide

Protein Sequence

Length: 322

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.578	1.083	1.073	2.249	0.983	1.593	0.776	2.64	0.621	0.965	1.129	1.644	1.467	1.433	1.331	0.577	0.611	0.518	0.478	0.822	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14667	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RHRR	—	—	—	—	—	—	0.000	—	—	0.694	0.063	0.008	0.573	0.059	0.117	0.062	0.006	0.036	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002491	3.000	1.000	Hsc_gene_6736.t1	Hsc_gene_6736.t1	—	Q9VPT8.1 Cleavage and polyadenylation specificity factor subunit 4 [Drosophila melanogaster]	KAI1724906.1 zinc finger c-x8-C-x5-C-x3-H type (and similar) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0008270\|GO:0046872	GO:0003674_0.811\|GO:0005575_0.729\|GO:0110165_0.725\|GO:0005622_0.665\|GO:0016020_0.608\|GO:0043226_0.604\|GO:0005488_0.597\|GO:0043229_0.592\|GO:0008150_0.586\|GO:0043227_0.568\|GO:0005634_0.560\|GO:0043231_0.560\|GO:0009987_0.537	IPR000571+57-81_82-108_82-109_110-136_110-137_138-162_138-164_163-189_165-187_165-188+\|IPR001878+209-225_210-224_259-276_260-276_261-276+\|IPR036855+83-107_162-187+\|IPR036875+207-229_243-276+\|IPR045348+32-294+	SM00343+209-225_260-276+\|SM00356+57-81_82-108_110-136_138-164_165-188+	PF00098+259-276+Zinc_knuckle\|PF00642+165-187+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)\|PF14608+116-134+RNA-binding,_Nab2-type_zinc_finger\|PF18345+88-106+Zinc_finger_domain	G3DSA:4.10.1000.10:FF:000005+82-140+cleavage_and_polyadenylation_specificity_factor_subunit_4	PTHR23102+32-294+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;280-322	1.000	10-279	8r8r_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.826	37032.230	8.143	15.500	31.056	13.975	49.689	50.311	19.255	11.801	47.205

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1336.835	1911.841	996.599	1119.016	1044.546	857.314	790.875	1118.965	1488.349	1792.708	1662.268

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.171	-0.910	0.277	-0.132	-0.270	—	0.280	-0.358	—	—	—	—	—

No JSON data available for plots.

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