Hg_chrom8_TN10mRNA_15528
Organism: Heterodera glycines Gene Locus: chr8:4885111-4886920 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 0.834 | 0.797 | 0.962 | 1.793 | 1.226 | 0.664 | 1.195 | 1.239 | 0.969 | 1.449 | 1.64 | 1.66 | 0.306 | 2.439 | 1.024 | 0.457 | 0.423 | 1.226 | 0.234 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14668
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRIETQRKESKRRAH,KRRAHERIGKQKKHQK,KREAKQRDLEKARAKKE,RKESKRRAHERIGKQKKH,RKRRQMAELRERARIERR,KQRDLEKARAKKEESEQKLLEKKERRERKRRQMAELRERARIER
|
7-29
|
0.732
|
— | — | — | — |
0.000
|
— | — |
0.425
|
0.221
|
0.033
|
0.301
|
0.451
|
0.186
|
0.232
|
0.004
|
0.163
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000925
|
4.000
|
2.000
|
Hsc_gene_6704.t1;Hsc_gene_6740.t1
|
— | — | — |
KAI3415955.1 hypothetical protein GPALN_005516 [Globodera pallida]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-251
|
1.000
|
1-73
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
29681.980
|
10.376
|
19.000
|
39.044
|
10.757
|
57.371
|
42.629
|
23.904
|
15.139
|
36.653
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
392.093
|
804.137
|
622.502
|
472.690
|
312.470
|
336.505
|
226.985
|
442.484
|
618.282
|
45.031
|
290.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.600
|
-0.904
|
-0.287
|
-0.628
|
— |
-0.558
|
0.292
|
-0.821
|
3.624
|
— | — | — | — |
No JSON data available for plots.