Hg_chrom8_TN10mRNA_15530
Organism: Heterodera glycines Gene Locus: chr8:4888632-4891314 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.437 | 1.389 | 1.117 | 0.53 | 0.626 | 1.4 | 0.813 | 1.024 | 1.176 | 1.222 | 0.802 | 1.405 | 1.517 | 1.05 | 1.149 | 1.414 | 0.867 | 0.983 | 1.05 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14670
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRIKVISKPSKKKLA
|
10-48
|
0.936
|
20-65
|
0.999
|
— | — |
0.306
|
— | — |
0.697
|
0.243
|
0.013
|
0.524
|
0.130
|
0.059
|
0.104
|
0.027
|
0.144
|
0.173
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001425
|
4.000
|
1.000
|
Hsc_gene_6735.t1
|
Hsc_gene_6735.t1
|
— |
V6CLJ5.1 Suppressor of hairless protein homolog [Caenorhabditis elegans]
|
KAI1705474.1 beta-trefoil DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0001228|GO:0003677|GO:0003700|GO:0005634|GO:0006355|GO:0006357
|
GO:0008150_0.949|GO:0009987_0.894|GO:0003674_0.862|GO:0065007_0.859|GO:0050789_0.847|GO:0005575_0.834|GO:0050794_0.833|GO:0110165_0.833|GO:0008152_0.801|GO:0005488_0.797|GO:0044238_0.795|GO:0043170_0.789|GO:0009058_0.779|GO:0044237_0.776|GO:0005622_0.766|GO:0009059_0.760|GO:0044249_0.760|GO:0019222_0.751|GO:0031323_0.749|GO:0016020_0.748|GO:0010467_0.747|GO:0060255_0.742|GO:0006139_0.740|GO:0080090_0.740|GO:0034654_0.731|GO:0009889_0.728|GO:0090304_0.727|GO:0031326_0.726|GO:0010556_0.724|GO:0043226_0.724|GO:0010468_0.723|GO:0016070_0.721|GO:0141187_0.718|GO:0032774_0.716|GO:0043229_0.711|GO:0097159_0.708|GO:0019219_0.705|GO:0051252_0.704|GO:0006351_0.699|GO:0006355_0.696|GO:2001141_0.696|GO:0003676_0.691|GO:0043227_0.689|GO:0048518_0.675|GO:0043231_0.667|GO:0003677_0.666|GO:0048522_0.666|GO:0003690_0.664|GO:0043565_0.664|GO:1990837_0.664|GO:0050896_0.663|GO:0000976_0.662|GO:0001067_0.662|GO:0009893_0.638|GO:0031325_0.630|GO:0051716_0.630|GO:0010604_0.628|GO:0009891_0.623|GO:0031328_0.622|GO:0010557_0.620|GO:0045935_0.610|GO:0006366_0.607|GO:0051254_0.607|GO:0006357_0.603|GO:1902680_0.603|GO:0045893_0.602|GO:0007154_0.599|GO:0045944_0.596|GO:0023052_0.595|GO:0007165_0.585|GO:0005634_0.578|GO:0000977_0.575|GO:0032501_0.570|GO:0032502_0.564|GO:0048856_0.564|GO:0043228_0.558|GO:0043232_0.558|GO:0140110_0.542|GO:0003700_0.538|GO:0007275_0.533|GO:0048519_0.519|GO:0032991_0.514|GO:0048523_0.506
|
IPR008967+67-214+|IPR013783+429-570+|IPR014756+408-568+|IPR015350+228-402_256-375+|IPR015351+65-222_73-216+|IPR036358+226-407+|IPR037095+71-427+|IPR040159+72-572+
|
SM01267+65-222+|SM01268+228-402+
|
PF09270+256-375+Beta-trefoil_DNA-binding_domain|PF09271+73-216+LAG1,_DNA_binding
|
— |
PTHR10665+72-572+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
568-586
|
1.000
|
1-567
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
66017.900
|
8.520
|
12.000
|
22.867
|
11.775
|
49.488
|
50.512
|
12.969
|
9.898
|
51.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
273.986
|
176.064
|
170.781
|
143.869
|
139.683
|
148.379
|
371.291
|
339.038
|
177.334
|
507.273
|
365.870
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.274
|
-0.428
|
— | — | — |
1.336
|
1.088
|
0.274
|
— | — |
-1.569
|
— | — |
No JSON data available for plots.