SCN Proteipedia

Hg_chrom8_TN10mRNA_15533

Organism: Heterodera glycines Gene Locus: chr8:4892268-4895103 Feature type: polypeptide

Protein Sequence

Length: 716

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.487	1.039	0.787	1.108	0.582	1.11	0.466	1.466	1.397	1.699	1.016	1.15	1.94	0.564	2.166	1.177	0.687	0.804	0.859	0.657	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14672	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.574

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRTLSLTVDYCRYRQRRP,RRGEKRRRHRKKYRRQKRT,RRICSQSFDLLRAERKLRF,KKCSVRPIVILRNARLKNK,KERRGEKRRRHRKKYRRQKR	14-41	0.969	—	—	—	—	0.000	—	—	0.855	0.462	0.004	0.270	0.044	0.029	0.058	0.039	0.013	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001426	4.000	1.000	Hsc_gene_6733.t1	Hsc_gene_6733.t1	—	—	KAI1709073.1 reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein [Ditylenchus destructor]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003721\|GO:0003964	GO:0008150_0.958\|GO:0005575_0.918\|GO:0009987_0.917\|GO:0110165_0.916\|GO:0016020_0.862\|GO:0005622_0.856\|GO:0043226_0.822\|GO:0043229_0.812\|GO:0043227_0.777\|GO:0043231_0.764\|GO:0065007_0.732\|GO:0050789_0.717\|GO:0050794_0.700\|GO:0003674_0.679\|GO:0050896_0.663\|GO:0051716_0.637\|GO:0005737_0.624\|GO:0008152_0.610\|GO:0044238_0.610\|GO:0048518_0.606\|GO:0009058_0.602\|GO:0043170_0.600\|GO:0044237_0.593\|GO:0048522_0.591\|GO:0044249_0.587\|GO:0071840_0.582\|GO:0016043_0.580\|GO:0009059_0.576\|GO:0006139_0.552\|GO:0034654_0.538\|GO:0090304_0.538\|GO:0006996_0.536\|GO:0003824_0.530\|GO:0141187_0.530\|GO:0016740_0.517\|GO:0006259_0.501\|GO:0032501_0.501	IPR000477+259-581_464-549+\|IPR003545+116-621_346-362_468-484_513-525+\|IPR021891+131-246+\|IPR043502+475-551+	—	PF00078+464-549+Reverse_transcriptase_(RNA-dependent_DNA_polymerase)\|PF12009+131-246+Telomerase_ribonucleoprotein_complex_-_RNA_binding_domain	—	PTHR12066+116-621+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30	1.000	31-716	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.648	83991.430	10.947	78.500	28.073	13.268	49.302	50.698	20.251	7.821	40.782

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightgreen	332.510	603.741	414.151	339.976	289.266	254.881	421.354	454.611	67.809	362.130	235.993

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.774	-0.966	-0.175	-0.265	—	0.733	0.730	—	—	—	—	—	—

No JSON data available for plots.

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