Hg_chrom8_TN10mRNA_15535
Organism: Heterodera glycines Gene Locus: chr8:4898484-4901754 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.103 | 0.898 | 0.886 | 1.087 | 1.013 | 0.965 | 0.889 | 1.142 | 1.229 | 0.868 | 0.465 | 1.647 | 0.798 | 0.847 | 0.819 | 1.004 | 1.347 | 0.456 | 0.581 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14674
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.529
|
0.357
|
0.062
|
0.646
|
0.251
|
0.345
|
0.142
|
0.066
|
0.217
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002494
|
3.000
|
1.000
|
Hsc_gene_6730.t1
|
Hsc_gene_6730.t1
|
— |
Q7ZVB2.1 4-trimethylaminobutyraldehyde dehydrogenase A [Danio rerio]
|
KAI1725294.1 aldehyde dehydrogenase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0016620
|
GO:0008150_0.808|GO:0005575_0.753|GO:0110165_0.738|GO:0003674_0.730|GO:0005622_0.628|GO:0009987_0.619|GO:0003824_0.613|GO:0005737_0.589|GO:0008152_0.581|GO:0016491_0.512
|
IPR015590+35-493+|IPR016161+32-496+|IPR016162+33-492+|IPR016163+271-462+|IPR029510+267-274+
|
— |
PF00171+35-493+Aldehyde_dehydrogenase_family
|
G3DSA:3.40.309.10:FF:000012+271-462+Betaine_aldehyde_dehydrogenase|G3DSA:3.40.605.10:FF:000007+26-300+NAD/NADP-dependent_betaine_aldehyde_dehydrogenase
|
PTHR11699+30-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
55075.850
|
5.881
|
-3.500
|
23.123
|
10.277
|
43.676
|
56.324
|
11.660
|
11.462
|
54.348
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
199.695
|
66.072
|
102.305
|
67.998
|
84.201
|
116.957
|
297.573
|
323.880
|
70.853
|
423.404
|
272.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.401
|
— |
-0.480
|
— |
0.488
|
1.358
|
1.364
|
— |
-2.639
|
— | — | — | — |
No JSON data available for plots.