Hg_chrom8_TN10mRNA_15537
Organism: Heterodera glycines Gene Locus: chr8:4905815-4909881 Feature type: polypeptideProtein Sequence
Length: 906
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 0.898 | 0.983 | 0.761 | 1.177 | 1.726 | 0.447 | 1.214 | 1.57 | 1.73 | 1.02 | 1.104 | 1.38 | 0.488 | 1.104 | 1.372 | 0.561 | 0.819 | 0.764 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14676
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.355
|
0.114
|
0.008
|
0.545
|
0.162
|
0.505
|
0.489
|
0.070
|
0.169
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002496
|
3.000
|
1.000
|
Hsc_gene_6728.t1
|
Hsc_gene_6728.t1
|
— |
Q9XWS2.2 Exocyst complex component 4 [Caenorhabditis elegans]
|
KAF7635930.1 Sec8_exocyst domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0006904|GO:0090522
|
GO:0008150_0.963|GO:0009987_0.929|GO:0005575_0.772|GO:0110165_0.772|GO:0005622_0.732|GO:0051179_0.699|GO:0016020_0.691|GO:0051234_0.683|GO:0006810_0.680|GO:0071944_0.626|GO:0051641_0.610|GO:0005886_0.593|GO:0043226_0.584|GO:0043229_0.567|GO:0071840_0.563|GO:0005737_0.553|GO:0065007_0.528|GO:0050789_0.519
|
IPR007191+46-140+|IPR039682+343-897+
|
— |
PF04048+46-140+Exocyst_complex_component_Sec8_N-terminal
|
— |
PTHR14146+343-897+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;906-906
|
1.000
|
8-905
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
103277.860
|
7.142
|
8.000
|
27.042
|
10.044
|
50.662
|
49.338
|
14.570
|
12.472
|
42.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1098.224
|
1064.911
|
679.274
|
748.077
|
777.780
|
718.602
|
772.894
|
881.552
|
596.101
|
2241.497
|
1536.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.878
|
-0.647
|
0.247
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.