Hg_chrom8_TN10mRNA_15538
Organism: Heterodera glycines Gene Locus: chr8:4910042-4912787 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 0.936 | 0.693 | 0.731 | 1.695 | 1.304 | 0.378 | 1.377 | 1.507 | 1.432 | 1.348 | 2.617 | 1.059 | 0.489 | 1.081 | 0.787 | 0.695 | 1.124 | 0.652 | 0.685 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14677
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.659
|
0.175
|
0.027
|
0.555
|
0.154
|
0.207
|
0.344
|
0.003
|
0.080
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011922
|
1.000
|
1.000
|
Hsc_gene_6727.t1
|
Hsc_gene_6727.t1
|
— |
Q9D8W5.4 26S proteasome non-ATPase regulatory subunit 12 [Mus musculus]
|
KAF7629840.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.904|GO:0005622_0.873|GO:0016020_0.703|GO:0043226_0.690|GO:0032991_0.675|GO:0043229_0.672|GO:0043227_0.646|GO:0043231_0.617|GO:0005737_0.589|GO:1902494_0.534|GO:0140535_0.516
|
IPR000717+242-430_359-439_360-427+|IPR036388+354-435+|IPR036390+358-434+|IPR040134+13-464+|IPR040896+434-465+
|
SM00088+359-439+
|
PF01399+360-427+PCI_domain|PF18098+434-465+26S_proteasome_regulatory_subunit_RPN5_C-terminal_domain|PF22241+40-258+PSMD12/CSN4,_N-terminal
|
G3DSA:1.10.10.10:FF:000070+355-435+26S_proteasome_non-ATPase_regulatory_subunit_12
|
PTHR10855+13-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
54693.810
|
7.647
|
7.500
|
30.932
|
9.746
|
49.788
|
50.212
|
16.949
|
13.983
|
38.983
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
3109.055
|
3328.537
|
2419.179
|
3479.611
|
3609.039
|
3277.688
|
3079.843
|
2683.399
|
2447.412
|
3562.569
|
3084.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
-0.073
|
0.633
|
— |
-0.124
|
— |
-0.392
|
0.341
|
— | — | — | — | — |
No JSON data available for plots.