Hg_chrom8_TN10mRNA_15539
Organism: Heterodera glycines Gene Locus: chr8:4913345-4920507 Feature type: polypeptideProtein Sequence
Length: 1,996
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.008 | 1.433 | 0.774 | 1.037 | 1.194 | 3.481 | 0.537 | 0.927 | 0.902 | 0.894 | 0.964 | 1.297 | 0.988 | 0.78 | 0.971 | 0.866 | 0.772 | 0.782 | 0.771 | 0.663 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14678
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.994
|
1.000
|
0.000
|
0.000
|
0.402
|
0.070
|
0.013
|
0.309
|
0.097
|
0.093
|
0.178
|
0.004
|
0.125
|
0.770
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000926
|
4.000
|
2.000
|
Hsc_gene_6726.t1;Hsc_gene_6737.t1
|
Hsc_gene_6726.t1;Hsc_gene_6737.t1
|
— |
P18948.5 Vitellogenin-6 [Caenorhabditis elegans]
|
KAI1713929.1 lipoprotein amino terminal region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005319|GO:0006869
|
GO:0005575_0.671|GO:0008150_0.669|GO:0110165_0.668|GO:0009987_0.635|GO:0005622_0.574|GO:0065007_0.573|GO:0050789_0.560|GO:0050794_0.536|GO:0016020_0.508
|
IPR001747+48-809_50-284_50-741_304-741+|IPR001846+1526-1707_1535-1729_1537-1707+|IPR011030+420-772_425-766+|IPR015255+773-1085_775-1077+|IPR015816+50-392+|IPR015819+51-278_896-1108+|IPR050733+50-1857+
|
SM00216+1526-1707+|SM00638+50-741+|SM01169+773-1085+
|
PF00094+1537-1707+von_Willebrand_factor_type_D_domain|PF01347+50-284_304-741+Lipoprotein_amino_terminal_region|PF09172+775-1077+Vitellinogen,_open_beta-sheet
|
— |
PTHR23345+50-1857+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-324;360-425;1216-1278;1690-1799
|
5.000
|
1-270;325-359;426-1215;1279-1689;1800-1996
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
226341.630
|
7.049
|
12.500
|
24.399
|
8.667
|
54.910
|
45.090
|
12.976
|
11.423
|
46.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
67187.550
|
164.899
|
780.107
|
266.507
|
230.208
|
15866.684
|
755774.910
|
2382.869
|
1088.033
|
2329.687
|
1797.550
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.014
|
0.555
|
-1.442
|
-0.244
|
6.118
|
5.588
|
-2.854
|
8.459
|
— | — | — | — | — |