Hg_chrom8_TN10mRNA_15540
Organism: Heterodera glycines Gene Locus: chr8:4920704-4922146 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.123 | 1.255 | 0.826 | 0.098 | 1.231 | 1.967 | 1.116 | 0.284 | 0.694 | 0.883 | 0.43 | 1.17 | 0.947 | 1.475 | 1.739 | 1.623 | 0.838 | 0.43 | 0.874 | 0.167 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.473
|
0.141
|
0.032
|
0.553
|
0.084
|
0.099
|
0.162
|
0.082
|
0.224
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011923
|
1.000
|
1.000
|
Hsc_gene_6725.t1
|
Hsc_gene_6725.t1;Hsc_gene_6725.t2
|
— | — |
KAI1698910.1 intraflagellar transport protein 43 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030991
|
GO:0005575_0.913|GO:0110165_0.907|GO:0005622_0.861|GO:0016020_0.839|GO:0043226_0.809|GO:0043229_0.794|GO:0043227_0.762|GO:0071944_0.679|GO:0043228_0.664|GO:0043232_0.662|GO:0005886_0.652|GO:0032991_0.638|GO:0008150_0.605|GO:0098590_0.573|GO:0005856_0.572|GO:0042995_0.571|GO:0120025_0.570|GO:0015630_0.557|GO:0005815_0.550|GO:0005929_0.550|GO:0009987_0.550|GO:0030990_0.550|GO:0005814_0.548|GO:0030991_0.540
|
IPR029302+227-308+
|
— |
PF15305+227-308+Intraflagellar_transport_protein_43
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-232;305-352
|
1.000
|
233-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
38007.700
|
5.969
|
-1.000
|
23.864
|
5.682
|
53.409
|
46.591
|
11.932
|
11.932
|
56.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
186.286
|
233.827
|
254.719
|
133.206
|
78.908
|
73.822
|
167.678
|
118.578
|
16.905
|
404.544
|
238.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.949
|
-0.825
|
-0.786
|
— |
1.195
|
0.582
|
0.643
|
— | — | — | — | — |
No JSON data available for plots.