Hg_chrom8_TN10mRNA_15541
Organism: Heterodera glycines Gene Locus: chr8:4922306-4925837 Feature type: polypeptideProtein Sequence
Length: 848
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 1.07 | 0.729 | 0.447 | 0.865 | 0.968 | 0.828 | 1.061 | 1.468 | 2.119 | 0.447 | 1.041 | 2.096 | 0.522 | 0.722 | 0.977 | 0.696 | 0.965 | 1.633 | 0.867 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.561
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— |
KRKR
|
48-84
|
0.796
|
— | — | — | — |
0.000
|
— | — |
0.173
|
0.274
|
0.027
|
0.122
|
0.840
|
0.614
|
0.484
|
0.080
|
0.212
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011924
|
1.000
|
1.000
|
Hsc_gene_6724.t1
|
Hsc_gene_6724.t1
|
— |
E1BD52.1 Transmembrane protein 245 [Bos taurus]
|
KAH7731192.1 Protein M01F1.4 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002549+8-840+
|
— | — | — |
PTHR21716+8-840+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
525-574
|
2.000
|
1-524;575-848
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
94764.000
|
5.125
|
-14.000
|
17.807
|
14.741
|
37.264
|
62.736
|
8.608
|
9.198
|
45.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1110.271
|
1167.189
|
1839.470
|
1183.327
|
1308.265
|
1767.955
|
2239.378
|
1841.774
|
420.286
|
286.961
|
344.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.426
|
-0.117
|
-0.527
|
0.113
|
0.449
|
0.350
|
— |
0.424
|
— | — | — | — | — |
No JSON data available for plots.