SCN Proteipedia

Hg_chrom8_TN10mRNA_15542

Organism: Heterodera glycines Gene Locus: chr8:4926411-4931045 Feature type: polypeptide

Protein Sequence

Length: 865 (Signal peptide: 1-23)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.739	0.914	0.946	1.953	1.503	1.067	0.881	1.329	0.694	0.656	0.613	0.884	1.092	1.112	1.864	1.123	0.815	0.806	2.045	0.714	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14681	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.817

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	nucleus	KRSR,RRRR	—	—	—	—	1-23	0.923	0.934	0.000	0.000	0.196	0.114	0.013	0.319	0.108	0.080	0.130	0.014	0.328	0.832

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011925	1.000	1.000	Hsc_gene_6723.t1	Hsc_gene_6723.t1	—	Q9W770.1 Spondin-1 [Gallus gallus]	KAI1706815.1 spondin domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004867	GO:0005575_0.837\|GO:0110165_0.834\|GO:0008150_0.716\|GO:0009987_0.660\|GO:0003674_0.576\|GO:0071944_0.559\|GO:0016020_0.558\|GO:0065007_0.535\|GO:0050789_0.524	IPR000884+455-511_458-511_459-507_520-575_523-572_524-566_581-635_584-635_586-634_744-800_747-800_803-858_806-858_807-856+\|IPR002223+643-657_644-697_645-696_646-696_671-681_681-696+\|IPR002861+34-210_78-185_80-196+\|IPR009465+210-401_220-412_231-383+\|IPR020901+674-692+\|IPR036383+453-510_455-504_518-567_568-639_581-634_742-794_743-799_800-859_801-855+\|IPR036880+635-698_640-703+\|IPR038678+204-406+\|IPR042307+27-199+\|IPR044004+745-799+\|IPR051418+102-854+	SM00131+644-697+\|SM00209+458-511_523-572_584-635_747-800_806-858+	PF00014+645-696+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain\|PF00090+459-507_524-566_586-634_807-856+Thrombospondin_type_1_domain\|PF02014+78-185+Reeler_domain\|PF06468+220-412+Spondin_N\|PF19028+745-799+Spondin-like_TSP1_domain	G3DSA:2.60.40.2130:FF:000002+203-403+Putative_Spondin-1	PTHR11311+102-854+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	859-865	1.000	1-858	3q13_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.720	98265.730	6.651	2.500	30.058	11.676	50.983	49.017	15.838	14.220	52.486

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkorange	1288.062	3050.230	1423.333	1551.220	1005.184	2320.177	1823.573	1568.301	62.559	810.098	489.724

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.329	-1.113	0.233	-0.658	1.222	-0.337	-0.672	0.361	-3.816	4.827	—	—	—

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