Hg_chrom8_TN10mRNA_15543
Organism: Heterodera glycines Gene Locus: chr8:4932197-4934071 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.894 | 0.839 | 0.133 | 2.5 | 1.183 | 0.504 | 0.0 | 0.769 | 1.04 | 2.797 | 1.131 | 0.748 | 0.814 | 1.177 | 0.714 | 0.694 | 0.641 | 0.296 | 0.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14682
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKNVMEELESKQKNK,KKKGFLTPERKKKLRKLKL,RKKRIFREAKRQALAAKKAEVRKRLEEAGKKGKKKKGFLTPERKKKLRKLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.328
|
0.089
|
0.009
|
0.822
|
0.365
|
0.013
|
0.204
|
0.019
|
0.104
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011926
|
1.000
|
1.000
|
Hsc_gene_6722.t1
|
Hsc_gene_6722.t1;Hsc_gene_6722.t2
|
— |
Q9GYF1.2 Troponin I 2 [Caenorhabditis elegans]
|
KAI1706816.1 troponin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005861
|
GO:0005575_0.914|GO:0110165_0.912|GO:0005622_0.903|GO:0043226_0.856|GO:0043229_0.844|GO:0008150_0.816|GO:0043228_0.802|GO:0043232_0.802|GO:0005737_0.783|GO:0003674_0.667|GO:0005488_0.667|GO:0005515_0.613|GO:0099080_0.596|GO:0099081_0.559|GO:0099512_0.557
|
IPR001978+46-182+|IPR038077+30-203_39-190+|IPR050875+22-240+
|
— |
PF00992+46-182+Troponin
|
— |
PTHR13738+22-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;149-260
|
1.000
|
41-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
29878.200
|
10.127
|
12.000
|
43.846
|
4.231
|
61.538
|
38.462
|
24.231
|
19.615
|
38.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
18234.378
|
23433.825
|
35395.912
|
11525.169
|
4169.218
|
17964.043
|
859.883
|
105218.442
|
3521.015
|
2672.208
|
3035.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.366
|
-1.162
|
-1.511
|
-1.499
|
2.121
|
-4.373
|
2.448
|
-6.792
|
— |
1.854
|
— | — | — |
No JSON data available for plots.