Hg_chrom8_TN10mRNA_15544
Organism: Heterodera glycines Gene Locus: chr8:4934770-4938221 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.141 | 1.12 | 1.111 | 0.511 | 1.296 | 1.092 | 1.036 | 1.204 | 0.988 | 0.951 | 1.235 | 0.654 | 1.286 | 0.605 | 1.247 | 0.767 | 0.971 | 0.786 | 1.14 | 0.599 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14683
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
KRNDLATSLFGRRAEK,RKHIDVDTSWTGKERKT
|
— | — | — | — | — |
0.564
|
0.415
|
0.000
|
— |
0.434
|
0.336
|
0.033
|
0.384
|
0.170
|
0.115
|
0.230
|
0.026
|
0.396
|
0.424
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000923
|
5.000
|
1.000
|
Hsc_gene_6721.t1
|
Hsc_gene_26530.t1;Hsc_gene_3202.t1
|
— | — |
CDJ94557.1 C. briggsae CBR-TAG-297 protein [Haemonchus contortus]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051275+24-316+
|
— | — | — |
PTHR11640+24-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-193;532-540
|
2.000
|
1-74;194-531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
59957.330
|
7.913
|
8.500
|
30.556
|
10.556
|
50.926
|
49.074
|
16.667
|
13.889
|
50.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
879.303
|
1452.830
|
456.861
|
459.881
|
750.590
|
2238.886
|
758.283
|
1283.290
|
360.826
|
801.098
|
612.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.899
|
-1.796
|
— |
0.675
|
1.592
|
-1.550
|
-0.908
|
-0.615
|
— | — | — | — | — |