Hg_chrom8_TN10mRNA_15545
Organism: Heterodera glycines Gene Locus: chr8:4934834-4938221 Feature type: polypeptideProtein Sequence
Length: 623
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 1.045 | 1.167 | 0.886 | 1.257 | 1.029 | 0.955 | 1.124 | 0.963 | 1.019 | 1.289 | 0.661 | 1.204 | 0.679 | 1.245 | 0.734 | 1.079 | 0.73 | 1.235 | 0.661 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14683
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
KRNDLATSLFGRRAEK,RKHIDVDTSWTGKERKT
|
— | — | — | — | — |
0.564
|
0.415
|
0.000
|
— |
0.420
|
0.395
|
0.030
|
0.405
|
0.157
|
0.134
|
0.216
|
0.064
|
0.456
|
0.416
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000923
|
5.000
|
1.000
|
Hsc_gene_6721.t1
|
Hsc_gene_26530.t1;Hsc_gene_3202.t1;Hsc_gene_6719.t1;Hsc_gene_6721.t1
|
— | — |
CDJ94557.1 C. briggsae CBR-TAG-297 protein [Haemonchus contortus]
|
No
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051275+24-316+
|
— | — | — |
PTHR11640+24-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-193;615-623
|
2.000
|
1-74;194-614
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
69603.500
|
7.957
|
11.000
|
30.819
|
10.433
|
51.043
|
48.957
|
16.854
|
13.965
|
50.401
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
879.303
|
1452.830
|
456.861
|
459.881
|
750.590
|
2238.886
|
758.283
|
1283.290
|
360.826
|
801.098
|
612.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.899
|
-1.796
|
— |
0.675
|
1.592
|
-1.550
|
-0.908
|
-0.615
|
— | — | — | — | — |