Hg_chrom8_TN10mRNA_15548
Organism: Heterodera glycines Gene Locus: chr8:4948156-4952094 Feature type: polypeptideProtein Sequence
Length: 810
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.091 | 0.746 | 0.808 | 0.553 | 2.222 | 1.393 | 0.617 | 0.988 | 0.329 | 1.051 | 1.235 | 1.525 | 0.617 | 1.092 | 1.587 | 0.988 | 0.971 | 0.673 | 0.76 | 0.436 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14686
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KPRK,RRRK,RRERSGRSNAVKESERKRE,RSGRSNAVKESERKRETEKTTKREAKREKEEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.277
|
0.201
|
0.017
|
0.735
|
0.080
|
0.187
|
0.213
|
0.061
|
0.410
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011929
|
1.000
|
1.000
|
Hsc_gene_6718.t1
|
Hsc_gene_6718.t1
|
— |
D3ZEN0.2 MICAL-like protein 2 [Rattus norvegicus]
|
KAI3415972.1 [F-actin]-monooxygenase mical1, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.853|GO:0110165_0.849|GO:0008150_0.838|GO:0009987_0.818|GO:0005622_0.693|GO:0003674_0.655|GO:0005488_0.655|GO:0016020_0.643|GO:0043226_0.608|GO:0043229_0.590|GO:0005515_0.568|GO:0071840_0.539|GO:0016043_0.526|GO:0005737_0.524
|
IPR001781+213-276_214-269_215-249_215-270+
|
SM00132+214-269+
|
PF00412+215-270+LIM_domain
|
— |
PTHR10829+45-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-159;282-566;708-810
|
2.000
|
160-281;567-707
|
2co8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
91447.220
|
5.879
|
-7.000
|
35.679
|
6.667
|
57.160
|
42.840
|
17.901
|
17.778
|
46.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1993.948
|
5175.140
|
3087.001
|
1758.535
|
1438.476
|
2809.606
|
1336.867
|
2281.200
|
1415.288
|
954.499
|
1151.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.975
|
-1.694
|
-0.703
|
-0.321
|
0.981
|
-1.062
|
-0.404
|
-0.629
|
— | — | — | — | — |
No JSON data available for plots.