Hg_chrom8_TN10mRNA_15549
Organism: Heterodera glycines Gene Locus: chr8:4952561-4954618 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 0.645 | 0.648 | 0.546 | 1.65 | 1.726 | 0.684 | 0.99 | 0.836 | 1.07 | 1.71 | 0.815 | 1.705 | 0.838 | 1.94 | 1.047 | 0.779 | 0.51 | 1.371 | 0.233 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14687
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KHKR,KKRK,KRQRMANERSRKEEK,KKLEEEKNRGKRLKKT,RRPAETKKFGLRRRSV,KRQMGTKKLEEEKNRGKRL,KKTVQTLQEQLETEKRQRM,PKARTKRGKRWMRDELKRREQQQKKGGEGKEGQKKEKNEQKREKEEDNPQKRRREMSENGRRPAETKKFGLRRRS
|
7-34
|
0.996
|
37-87
|
0.998
|
— | — |
0.026
|
— | — |
0.367
|
0.166
|
0.019
|
0.618
|
0.070
|
0.108
|
0.156
|
0.008
|
0.351
|
0.282
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011930
|
1.000
|
1.000
|
Hsc_gene_6717.t1
|
— | — | — |
KAH7724432.1 Protein F17C8.3 [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001849+148-294+
|
SM00233+148-294+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;316-505
|
1.000
|
7-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
59028.450
|
10.668
|
42.000
|
36.238
|
10.693
|
57.822
|
42.178
|
22.772
|
13.465
|
38.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
294.754
|
860.019
|
465.025
|
174.892
|
151.663
|
298.958
|
60.546
|
1005.264
|
60.675
|
112.902
|
90.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.119
|
-2.435
|
-1.300
|
-0.237
|
0.993
|
-2.294
|
1.647
|
-3.912
|
— | — | — | — | — |
No JSON data available for plots.