Hg_chrom8_TN10mRNA_15552
Organism: Heterodera glycines Gene Locus: chr8:4964972-4973953 Feature type: polypeptideProtein Sequence
Length: 2,263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.11 | 1.004 | 0.731 | 1.304 | 1.473 | 0.468 | 1.436 | 1.002 | 0.973 | 0.991 | 1.456 | 0.908 | 1.164 | 1.551 | 1.294 | 0.833 | 0.723 | 0.782 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.685
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,RKLSRHRIPEHRRSKD,RKPLVMDYLVNCRKKLRQ,RRSRRHSRSPVHQRKLSR,KRALEEDRETEKNRDKRPK,RRRRTRTPSPHRRSRRHSR,RRSKDSKSPSPKKTRKERR,KRSEEADKNVTNSKEKKRS,RSERRRDKSKERSKQSSTEKPKRSREREGKKGERDRERERERGGRRRSRSKDRGTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.852
|
0.035
|
0.006
|
0.175
|
0.048
|
0.021
|
0.024
|
0.007
|
0.070
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000927
|
1.000
|
5.000
|
Hsc_gene_6714.t1;Hsc_gene_6714.t2;Hsc_gene_6714.t3;Hsc_gene_6714.t4;Hsc_gene_6714.t5
|
Hsc_gene_6714.t1;Hsc_gene_6714.t2;Hsc_gene_6714.t3;Hsc_gene_6714.t4;Hsc_gene_6714.t5;Hsc_gene_6714.t6
|
— | — |
KAH7726022.1 Protein Y79H2A.3 d [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
888-1447;1709-2022;2067-2263
|
3.000
|
1-887;1448-1708;2023-2066
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
258308.930
|
8.241
|
50.500
|
30.358
|
9.943
|
55.015
|
44.985
|
17.013
|
13.345
|
48.166
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
4728.299
|
4897.569
|
6966.316
|
4984.863
|
4313.362
|
3462.502
|
3827.490
|
3522.553
|
7498.596
|
3071.866
|
4969.036
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.278
|
-0.112
|
-0.374
|
-0.240
|
-0.302
|
0.155
|
— |
0.263
|
1.170
|
— | — | — | — |
No JSON data available for plots.