Hg_chrom8_TN10mRNA_15554
Organism: Heterodera glycines Gene Locus: chr8:4977830-4983931 Feature type: polypeptideProtein Sequence
Length: 1,150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.476 | 0.711 | 1.259 | 0.783 | 2.854 | 0.466 | 2.174 | 0.986 | 0.928 | 0.711 | 1.637 | 0.628 | 1.254 | 0.799 | 1.267 | 0.984 | 0.988 | 0.401 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14692
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRGGKRGGQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.916
|
0.064
|
0.013
|
0.330
|
0.025
|
0.025
|
0.030
|
0.007
|
0.062
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011934
|
1.000
|
1.000
|
Hsc_gene_6712.t1
|
Hsc_gene_6712.t1
|
— |
O88379.3 Bromodomain adjacent to zinc finger domain protein 1A [Mus musculus]
|
KAI1715179.1 bromodomain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.911|GO:0005575_0.878|GO:0110165_0.878|GO:0009987_0.830|GO:0005622_0.824|GO:0065007_0.781|GO:0043226_0.774|GO:0050789_0.774|GO:0016020_0.765|GO:0043229_0.745|GO:0050794_0.719|GO:0043227_0.692|GO:0008152_0.678|GO:0043170_0.678|GO:0003674_0.667|GO:0043231_0.657|GO:0005488_0.654|GO:0009058_0.650|GO:0009059_0.650|GO:0019222_0.650|GO:0044237_0.650|GO:0044249_0.650|GO:0060255_0.640|GO:0005634_0.637|GO:0010467_0.602|GO:0031323_0.599|GO:0009889_0.568|GO:0044238_0.563|GO:0031326_0.562|GO:0010556_0.560|GO:0080090_0.560|GO:0010468_0.556|GO:0048518_0.548|GO:0006139_0.547|GO:0090304_0.547|GO:0034654_0.541|GO:0141187_0.541|GO:0050896_0.520
|
IPR001487+1000-1104_1019-1085_1032-1048_1034-1085_1048-1066_1066-1085+|IPR001841+5-54+|IPR001965+936-987+|IPR011011+925-990+|IPR013083+911-996+|IPR019786+937-986+|IPR019787+934-989+|IPR036427+997-1110_1012-1107+|IPR043563+931-1079+
|
SM00249+936-987+|SM00297+1000-1104+
|
PF00439+1019-1085+Bromodomain
|
— |
PTHR46386+931-1079+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
349-546;605-921;1129-1150
|
3.000
|
1-348;547-604;922-1128
|
2md8_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
128098.230
|
7.510
|
25.000
|
21.565
|
9.043
|
53.913
|
46.087
|
12.957
|
8.609
|
52.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1750.020
|
3018.306
|
1979.157
|
1539.228
|
1511.382
|
1369.309
|
1544.238
|
1876.799
|
2332.384
|
1092.643
|
1623.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.839
|
-1.109
|
-0.254
|
— | — | — |
0.350
|
— | — | — | — | — | — |
No JSON data available for plots.