Hg_chrom8_TN10mRNA_15556
Organism: Heterodera glycines Gene Locus: chr8:4990050-4991419 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.22 | 0.954 | 0.0 | 1.698 | 1.029 | 0.955 | 1.543 | 1.097 | 1.084 | 1.403 | 1.816 | 0.857 | 0.356 | 1.386 | 0.75 | 0.557 | 0.795 | 2.137 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14694
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.508
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKAIRKLKLENGRLKTKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.697
|
0.166
|
0.008
|
0.362
|
0.120
|
0.087
|
0.147
|
0.005
|
0.074
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004743
|
2.000
|
1.000
|
Hsc_gene_6694.t1
|
Hsc_gene_6694.t1;Hsc_gene_6710.t1
|
— | — |
KAI1722994.1 N-glycosidase [Ditylenchus destructor]
|
No
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012816+127-258_130-254+|IPR037238+102-264_106-259+
|
— |
PF08719+127-258+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;292-324
|
1.000
|
3-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
37111.010
|
9.030
|
7.000
|
34.568
|
11.111
|
52.469
|
47.531
|
19.136
|
15.432
|
42.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5019.023
|
4956.301
|
6040.010
|
3799.612
|
4249.042
|
5197.038
|
3824.608
|
4479.520
|
9005.832
|
2999.054
|
5573.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.520
|
-0.560
|
0.129
|
0.305
|
-0.432
|
-0.317
|
— |
1.481
|
— | — | — | — |
No JSON data available for plots.