Hg_chrom8_TN10mRNA_15557
Organism: Heterodera glycines Gene Locus: chr8:4991700-4995514 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.491 | 1.407 | 0.524 | 0.397 | 0.889 | 1.884 | 1.235 | 1.873 | 0.704 | 0.837 | 0.502 | 2.882 | 0.881 | 0.914 | 1.059 | 1.153 | 0.992 | 0.589 | 0.222 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14695
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRKR,KKNVVRVWFCNQRQKQKRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.823
|
0.227
|
0.011
|
0.413
|
0.051
|
0.050
|
0.054
|
0.042
|
0.078
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004744
|
1.000
|
2.000
|
Hsc_gene_6709.t1;Hsc_gene_6709.t2
|
Hsc_gene_6709.t1;Hsc_gene_6709.t2
|
— |
P13528.2 Transcription factor unc-86 [Caenorhabditis elegans]
|
RCN35474.1 Pou domain - to homeobox domain protein [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000981|GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.962|GO:0009987_0.832|GO:0065007_0.821|GO:0050789_0.811|GO:0003674_0.802|GO:0050794_0.780|GO:0005488_0.777|GO:0097159_0.738|GO:0003676_0.727|GO:0008152_0.719|GO:0009058_0.716|GO:0044237_0.705|GO:0044249_0.705|GO:0009059_0.701|GO:0010467_0.701|GO:0043170_0.701|GO:0005575_0.687|GO:0044238_0.683|GO:0019222_0.671|GO:0031323_0.667|GO:0003677_0.665|GO:0006139_0.665|GO:0016070_0.665|GO:0090304_0.665|GO:0032774_0.664|GO:0034654_0.664|GO:0141187_0.664|GO:0009889_0.658|GO:0031326_0.658|GO:0032502_0.657|GO:0043565_0.657|GO:0110165_0.655|GO:0010468_0.654|GO:0010556_0.654|GO:0060255_0.654|GO:0006351_0.633|GO:0080090_0.629|GO:0019219_0.624|GO:0051252_0.624|GO:0003690_0.617|GO:0032501_0.617|GO:1990837_0.617|GO:0005622_0.603|GO:2001141_0.603|GO:0006355_0.599|GO:0048518_0.598|GO:0043226_0.585|GO:0043229_0.575|GO:0048522_0.570|GO:0000976_0.563|GO:0001067_0.563|GO:0048856_0.557|GO:0006366_0.553|GO:0016020_0.546|GO:0007275_0.519|GO:0140110_0.517|GO:0003700_0.502
|
IPR000327+309-386_313-386_327-339_354-367+|IPR001356+417-477_419-481_420-476_420-478+|IPR009057+419-486+|IPR010982+309-386_315-401+|IPR013847+328-345_354-367_370-385_418-438_453-468+|IPR017970+452-475+|IPR050255+122-575+
|
SM00352+309-386+|SM00389+419-481+
|
PF00046+420-476+Homeodomain|PF00157+313-386+Pou_domain_-_N-terminal_to_homeobox_domain
|
G3DSA:1.10.260.40:FF:000007+315-423+POU_domain_protein
|
PTHR11636+122-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;125-328;474-694
|
2.000
|
65-124;329-473
|
7xrc_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
73718.400
|
8.002
|
15.000
|
20.461
|
8.501
|
47.983
|
52.017
|
12.248
|
8.213
|
56.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
275.256
|
1148.925
|
892.398
|
379.216
|
98.076
|
48.820
|
56.155
|
263.756
|
43.964
|
88.518
|
69.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.594
|
-1.736
|
-1.126
|
-1.981
|
-0.993
|
— |
2.332
|
-2.089
|
— | — | — | — | — |
No JSON data available for plots.