Hg_chrom8_TN10mRNA_15558
Organism: Heterodera glycines Gene Locus: chr8:4998819-5000210 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.531 | 1.347 | 0.851 | 1.989 | 2.216 | 0.49 | 0.412 | 1.097 | 1.001 | 1.06 | 2.663 | 0.914 | 0.554 | 1.68 | 0.529 | 0.81 | 0.624 | 0.0 | 0.121 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14696
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.925
|
0.240
|
0.007
|
0.434
|
0.043
|
0.027
|
0.040
|
0.003
|
0.031
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011936
|
1.000
|
1.000
|
Hsc_gene_6707.t1
|
Hsc_gene_6707.t1
|
— |
Q96MF7.2 E3 SUMO-protein ligase NSE2 [Homo sapiens]
|
KAI1712115.1 zinc-finger of the MIZ type in nse subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000724|GO:0008270|GO:0019789|GO:0030915
|
GO:0008150_0.942|GO:0005575_0.923|GO:0110165_0.914|GO:0009987_0.899|GO:0065007_0.897|GO:0050789_0.887|GO:0005622_0.883|GO:0050794_0.875|GO:0003674_0.833|GO:0043226_0.809|GO:0050896_0.806|GO:0071840_0.801|GO:0016020_0.800|GO:0016043_0.799|GO:0008152_0.798|GO:0043170_0.798|GO:0051716_0.794|GO:0048518_0.793|GO:0043229_0.791|GO:0048522_0.779|GO:0006139_0.771|GO:0044238_0.771|GO:0090304_0.771|GO:0044237_0.760|GO:0032991_0.748|GO:0006996_0.744|GO:0043227_0.742|GO:0006950_0.732|GO:0005634_0.728|GO:0043231_0.728|GO:0043228_0.722|GO:0043232_0.722|GO:0051128_0.718|GO:0033554_0.710|GO:0007049_0.702|GO:0000280_0.701|GO:0022402_0.701|GO:0048285_0.701|GO:0051726_0.694|GO:0000278_0.693|GO:0006259_0.693|GO:0140014_0.693|GO:1903047_0.693|GO:0051130_0.692|GO:0033043_0.688|GO:0006974_0.687|GO:0010564_0.687|GO:0007059_0.686|GO:0051276_0.686|GO:0098813_0.685|GO:0003824_0.682|GO:0006310_0.682|GO:0140096_0.682|GO:0007346_0.681|GO:0006281_0.680|GO:0000070_0.679|GO:0000819_0.679|GO:0006302_0.679|GO:0010638_0.678|GO:0033044_0.678|GO:0044770_0.678|GO:0044772_0.678|GO:0045787_0.678|GO:0000725_0.677|GO:1901987_0.677|GO:0045931_0.676|GO:1901990_0.676|GO:0000724_0.675|GO:0032200_0.675|GO:0090068_0.675|GO:0000723_0.674|GO:1901989_0.674|GO:1901992_0.674|GO:2001252_0.674|GO:0016740_0.672|GO:0016746_0.671|GO:0016755_0.671|GO:0019787_0.671|GO:0000722_0.670|GO:0006312_0.670|GO:0007062_0.670|GO:0007063_0.670|GO:0007064_0.670|GO:0007088_0.670|GO:0007091_0.670|GO:0010965_0.670|GO:0030071_0.670|GO:0033045_0.670|GO:0034086_0.670|GO:0034088_0.670|GO:0034091_0.670|GO:0034093_0.670|GO:0034182_0.670|GO:0034184_0.670|GO:0044784_0.670|GO:0045840_0.670|GO:0045842_0.670|GO:0045876_0.670|GO:0051304_0.670|GO:0051306_0.670|GO:0051783_0.670|GO:0051785_0.670|GO:0051983_0.670|GO:0090398_0.670|GO:1901970_0.670|GO:1902099_0.670|GO:1902101_0.670|GO:1905818_0.670|GO:1905820_0.670|GO:0019789_0.650|GO:0031974_0.641|GO:0031981_0.641|GO:0043233_0.641|GO:0070013_0.641|GO:0005654_0.603|GO:1902494_0.590|GO:0005694_0.581|GO:1990234_0.564|GO:0000793_0.556|GO:0098687_0.556|GO:0016604_0.554|GO:0000781_0.545|GO:0016605_0.540|GO:0030915_0.540|GO:0106068_0.540
|
IPR004181+135-222_137-196_151-219+|IPR013083+143-235+|IPR026846+31-235+
|
— |
PF11789+137-196+Zinc-finger_of_the_MIZ_type_in_Nse_subunit
|
— |
PTHR21330+31-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-166;209-243
|
2.000
|
1-56;167-208
|
2yu4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
28100.570
|
4.721
|
-9.000
|
35.391
|
4.527
|
59.259
|
40.741
|
16.049
|
19.342
|
42.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
374.649
|
126.600
|
287.809
|
345.781
|
450.742
|
464.264
|
1052.595
|
272.804
|
71.342
|
460.359
|
293.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
1.312
|
0.374
|
0.351
|
— |
1.192
|
-0.874
|
2.092
|
— | — | — | — | — |
No JSON data available for plots.