Hg_chrom8_TN10mRNA_15560
Organism: Heterodera glycines Gene Locus: chr8:5004128-5006021 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 0.672 | 0.876 | 1.246 | 1.406 | 0.927 | 0.545 | 1.084 | 1.178 | 1.433 | 1.168 | 1.417 | 1.807 | 0.602 | 1.672 | 0.929 | 0.593 | 0.694 | 1.854 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14698
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRIETQRKESKRRAH,KRRAHERIGKQKKHQK,KREAKQRDLEKARAKKE,RKESKRRAHERIGKQKKH,RRQMAELRERARIERRRKN,AKQRDLEKARAKKEESEQKLLEKKERRERKRRQMAELRERARIERRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.169
|
0.185
|
0.031
|
0.236
|
0.535
|
0.516
|
0.490
|
0.009
|
0.443
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000925
|
4.000
|
2.000
|
Hsc_gene_6704.t1;Hsc_gene_6740.t1
|
Hsc_gene_6704.t1
|
— | — |
KAH7730070.1 Protein F59F4.3 [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-270
|
2.000
|
1-103;271-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
48680.380
|
8.724
|
15.500
|
31.325
|
13.735
|
47.952
|
52.048
|
18.072
|
13.253
|
40.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
961.159
|
1617.756
|
1241.600
|
750.439
|
661.526
|
926.967
|
1048.582
|
1425.995
|
810.447
|
719.909
|
758.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-1.245
|
-0.618
|
-0.213
|
0.501
|
0.188
|
0.518
|
-0.301
|
— | — | — | — |
5.555
|
No JSON data available for plots.