Hg_chrom8_TN10mRNA_15562
Organism: Heterodera glycines Gene Locus: chr8:5006820-5007482 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.282 | 1.861 | 0.543 | 0.787 | 0.0 | 1.031 | 1.181 | 0.875 | 0.958 | 0.477 | 1.39 | 1.531 | 0.757 | 3.214 | 1.012 | 0.129 | 0.954 | 0.0 | 1.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14700
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.680
|
0.198
|
0.050
|
0.365
|
0.021
|
0.048
|
0.018
|
0.014
|
0.041
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011938
|
1.000
|
1.000
|
Hsc_gene_6703.t2
|
Hsc_gene_6703.t1;Hsc_gene_6703.t2
|
— |
Q09511.1 Probable splicing factor, arginine/serine-rich 4 [Caenorhabditis elegans]
|
KAF7636489.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.832|GO:0110165_0.821|GO:0008150_0.810|GO:0005622_0.732|GO:0016020_0.728|GO:0003674_0.724|GO:0043226_0.703|GO:0043229_0.687|GO:0009987_0.677|GO:0005488_0.659|GO:0043227_0.652|GO:0043231_0.646|GO:0008152_0.584|GO:0009058_0.567|GO:0044237_0.565|GO:0044238_0.565|GO:0043170_0.553|GO:0005634_0.552|GO:0044249_0.551|GO:0009059_0.543|GO:0010467_0.535|GO:0006139_0.508
|
IPR000504+16-94_17-90_19-88+|IPR012677+2-114+|IPR035979+10-105+|IPR050907+17-106+
|
SM00360+17-90+
|
PF00076+19-88+RNA_recognition_motif
|
— |
PTHR23147+17-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-127
|
2kn4_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
14780.590
|
9.654
|
6.500
|
36.220
|
13.386
|
49.606
|
50.394
|
21.260
|
14.961
|
49.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
795.699
|
1659.638
|
822.313
|
980.651
|
1000.329
|
822.273
|
1002.986
|
1190.013
|
577.061
|
244.060
|
386.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.243
|
-0.896
|
0.363
|
— |
-0.268
|
0.296
|
0.427
|
— | — | — | — | — | — |
No JSON data available for plots.