Hg_chrom8_TN10mRNA_15564
Organism: Heterodera glycines Gene Locus: chr8:5011623-5014638 Feature type: polypeptideProtein Sequence
Length: 589
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.145 | 1.019 | 0.703 | 1.358 | 1.35 | 0.647 | 1.443 | 1.019 | 0.964 | 0.643 | 1.099 | 1.462 | 0.751 | 1.628 | 1.504 | 1.002 | 0.823 | 0.653 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14702
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.442
|
0.124
|
0.008
|
0.570
|
0.086
|
0.178
|
0.177
|
0.043
|
0.146
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011940
|
1.000
|
1.000
|
Hsc_gene_6701.t1
|
Hsc_gene_6701.t1
|
— | — |
KAI1724159.1 spindle-defective protein 2 [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR054090+211-325+
|
— |
PF22073+211-325+Cep192_domain_4
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-135;540-589
|
1.000
|
136-539
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
67074.730
|
6.460
|
-0.500
|
28.862
|
11.545
|
55.688
|
44.312
|
15.110
|
13.752
|
49.236
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
936.048
|
1329.411
|
853.016
|
831.800
|
985.035
|
883.173
|
1297.153
|
887.200
|
935.368
|
743.640
|
825.809
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.870
|
-0.814
|
— |
0.212
|
— |
0.566
|
— |
0.692
|
— | — | — | — | — |
No JSON data available for plots.