Hg_chrom8_TN10mRNA_15565
Organism: Heterodera glycines Gene Locus: chr8:5014752-5018165 Feature type: polypeptideProtein Sequence
Length: 584
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.075 | 0.965 | 0.827 | 0.97 | 0.966 | 0.734 | 0.942 | 1.104 | 0.972 | 0.649 | 1.309 | 1.617 | 1.021 | 1.712 | 1.076 | 0.73 | 1.038 | 1.317 | 0.957 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14703
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
4-39
|
0.962
|
— | — | — | — |
0.381
|
— | — |
0.065
|
0.067
|
0.014
|
0.255
|
0.254
|
0.288
|
0.417
|
0.010
|
0.203
|
0.728
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004745
|
1.000
|
2.000
|
Hsc_gene_6700.t1;Hsc_gene_6700.t2
|
Hsc_gene_6699.t1;Hsc_gene_6700.t1;Hsc_gene_6700.t2
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
KAI1709568.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.672|GO:0005575_0.634|GO:0110165_0.632|GO:0008150_0.625|GO:0003824_0.548
|
IPR000834+169-473_176-476_195-207_218-232_314-322_370-383_373-383+|IPR003146+62-134+|IPR003582+547-584_548-584+|IPR036990+57-137+
|
SM00631+169-473+
|
PF00246+176-476+Zinc_carboxypeptidase|PF01549+547-584+ShK_domain-like|PF02244+62-134+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000084+163-489+Carboxypeptidase_B2
|
PTHR11705+41-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
66222.370
|
8.561
|
14.500
|
25.685
|
12.671
|
46.062
|
53.938
|
14.555
|
11.130
|
50.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
2162.450
|
728.964
|
684.694
|
1382.268
|
3759.282
|
12735.399
|
1209.858
|
2310.731
|
59.405
|
861.969
|
518.013
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.318
|
0.786
|
1.121
|
1.411
|
1.776
|
-3.386
|
-2.569
|
-0.791
|
-3.994
|
4.740
|
— | — | — |
No JSON data available for plots.