Hg_chrom8_TN10mRNA_15566
Organism: Heterodera glycines Gene Locus: chr8:5018998-5024140 Feature type: polypeptideProtein Sequence
Length: 1,179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.203 | 1.018 | 0.439 | 2.431 | 1.218 | 0.616 | 1.315 | 1.037 | 1.181 | 1.131 | 1.646 | 0.707 | 0.571 | 1.402 | 0.618 | 0.417 | 0.668 | 0.522 | 1.172 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14704
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRP,RKKR,RRQREQQEEQRRRLL,RKDYKAALHQYKRCLK,RRRLLARQAEEERRRQE,RRQKKIKAVEKRKRDRN,KRKRDRNLDEQVPARLRGK,KRDRNLDEQVPARLRGKIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.960
|
0.017
|
0.012
|
0.307
|
0.051
|
0.042
|
0.065
|
0.003
|
0.083
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011941
|
1.000
|
1.000
|
Hsc_gene_6698.t1
|
Hsc_gene_18339.t1;Hsc_gene_6698.t1
|
— |
Q6PD62.1 RNA polymerase-associated protein CTR9 homolog [Homo sapiens]
|
KAI1707237.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006355
|
GO:0005575_0.937|GO:0110165_0.935|GO:0005622_0.917|GO:0008150_0.908|GO:0009987_0.880|GO:0043226_0.865|GO:0016020_0.856|GO:0043229_0.829|GO:0065007_0.823|GO:0050789_0.807|GO:0043227_0.782|GO:0050794_0.760|GO:0008152_0.731|GO:0043170_0.731|GO:0044238_0.724|GO:0043231_0.717|GO:0009058_0.716|GO:0044237_0.716|GO:0009059_0.710|GO:0044249_0.710|GO:0019222_0.697|GO:0005634_0.696|GO:0048519_0.691|GO:0060255_0.691|GO:0010467_0.688|GO:0006139_0.687|GO:0032502_0.685|GO:0048856_0.685|GO:0080090_0.683|GO:0032501_0.679|GO:0090304_0.678|GO:0031323_0.672|GO:0034654_0.669|GO:0016070_0.665|GO:0141187_0.662|GO:0009889_0.657|GO:0031326_0.657|GO:0010556_0.653|GO:0010468_0.652|GO:0032774_0.652|GO:0007275_0.647|GO:0019219_0.635|GO:0051252_0.628|GO:0006351_0.627|GO:0006355_0.623|GO:2001141_0.623|GO:0032991_0.569|GO:0048523_0.559|GO:0048869_0.530|GO:0030154_0.525|GO:0006366_0.506|GO:0003674_0.505|GO:0006357_0.502
|
IPR011990+57-312_313-500_410-497_470-694_502-625_639-817_652-782+|IPR019734+174-207_209-242_280-313_317-346_317-350_352-385_355-384_470-503_517-550_551-584_585-618_665-698_699-732_735-768+|IPR031101+8-1053+
|
SM00028+174-207_209-242_280-313_317-350_352-385_470-503_517-550_551-584_585-618_665-698_699-732_735-768+
|
PF13181+317-346_355-384+Tetratricopeptide_repeat|PF13374+470-497+Tetratricopeptide_repeat|PF14559+187-246+Tetratricopeptide_repeat
|
G3DSA:1.25.40.10:FF:000289+35-309+RNA_polymerase-associated_protein_CTR9_homolog|G3DSA:1.25.40.10:FF:000322+512-816+RNA_polymerase-associated_protein_CTR9_homolog
|
PTHR14027+8-1053+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
844-1179
|
1.000
|
1-843
|
6gmh_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
136369.640
|
4.765
|
-53.500
|
37.150
|
9.839
|
53.944
|
46.056
|
16.964
|
20.187
|
40.288
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
5199.824
|
6852.781
|
3785.314
|
4519.177
|
5043.144
|
3844.088
|
4080.924
|
2534.532
|
6071.371
|
6698.218
|
6429.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.086
|
-0.738
|
0.365
|
0.127
|
-0.377
|
— |
-0.709
|
0.832
|
— | — | — | — | — |
No JSON data available for plots.