Hg_chrom8_TN10mRNA_15569
Organism: Heterodera glycines Gene Locus: chr8:5028740-5030379 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.303 | 1.097 | 1.189 | 1.437 | 0.884 | 0.924 | 2.155 | 1.054 | 1.165 | 0.914 | 1.014 | 1.916 | 0.829 | 0.616 | 0.677 | 0.636 | 0.653 | 0.995 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14707
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.505
|
0.194
|
0.010
|
0.661
|
0.161
|
0.170
|
0.089
|
0.004
|
0.160
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011944
|
1.000
|
1.000
|
Hsc_gene_6695.t1
|
Hsc_gene_6695.t1
|
— |
P35122.2 Ubiquitin carboxyl-terminal hydrolase [Drosophila melanogaster]
|
KAF7638019.1 Ubiquitin carboxyl-terminal hydrolase [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0006511
|
GO:0008150_0.937|GO:0003674_0.835|GO:0003824_0.765|GO:0016787_0.661|GO:0005575_0.646|GO:0140096_0.644|GO:0008152_0.638|GO:0008233_0.625|GO:0019783_0.606|GO:0101005_0.606|GO:0044238_0.600|GO:0110165_0.585|GO:0009987_0.538|GO:0005622_0.520|GO:0005737_0.517
|
IPR001578+9-229_10-214_12-29_48-60_93-110_165-176_181-191+|IPR036959+6-230+|IPR038765+9-228+
|
— |
PF01088+10-214+Ubiquitin_carboxyl-terminal_hydrolase,_family_1
|
— |
PTHR10589+9-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
26100.370
|
4.999
|
-8.000
|
28.017
|
15.517
|
45.690
|
54.310
|
13.362
|
14.655
|
48.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
3066.118
|
2308.316
|
2083.538
|
1731.688
|
1931.720
|
1696.604
|
2202.908
|
2211.908
|
1883.743
|
6688.953
|
4629.577
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.378
|
-0.552
|
-0.158
|
0.126
|
-0.172
|
0.388
|
0.278
|
— |
-1.922
|
— | — | — | — |
No JSON data available for plots.