Hg_chrom8_TN10mRNA_15572
Organism: Heterodera glycines Gene Locus: chr8:5038243-5039454 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.981 | 0.997 | 1.164 | 1.758 | 0.757 | 0.753 | 1.477 | 1.5 | 1.083 | 0.895 | 1.241 | 2.813 | 0.649 | 0.517 | 1.085 | 0.553 | 0.767 | 0.325 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14710
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.259
|
0.010
|
0.706
|
0.221
|
0.175
|
0.189
|
0.016
|
0.107
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011945
|
1.000
|
1.000
|
Hsc_gene_6693.t1
|
Hsc_gene_6693.t1
|
— | — |
KAF7638019.1 Ubiquitin carboxyl-terminal hydrolase [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0006511
|
GO:0008150_0.939|GO:0003674_0.782|GO:0009987_0.672|GO:0003824_0.650|GO:0008152_0.641|GO:0005575_0.638|GO:0110165_0.596|GO:0016787_0.590|GO:0140096_0.578|GO:0065007_0.576|GO:0008233_0.565|GO:0019783_0.551|GO:0101005_0.551|GO:0005622_0.549|GO:0050789_0.548|GO:0044238_0.546|GO:0043170_0.542|GO:0005488_0.501
|
IPR001578+2-219_2-234_4-21_40-52_85-102_186-196+|IPR036959+1-235+|IPR038765+2-233+
|
— |
PF01088+2-219+Ubiquitin_carboxyl-terminal_hydrolase,_family_1
|
— |
PTHR10589+2-234+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
26875.450
|
4.430
|
-14.500
|
27.426
|
16.034
|
45.570
|
54.430
|
11.392
|
16.034
|
45.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
622.281
|
267.021
|
447.409
|
353.848
|
855.923
|
578.913
|
1423.186
|
193.187
|
47.976
|
1141.690
|
672.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
0.269
|
-0.228
|
1.243
|
-0.550
|
1.309
|
-1.691
|
3.025
|
-4.695
|
— | — | — | — |
No JSON data available for plots.