SCN Proteipedia

Hg_chrom8_TN10mRNA_15573

Organism: Heterodera glycines Gene Locus: chr8:5044191-5051666 Feature type: polypeptide

Protein Sequence

Length: 1,744

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.327	0.907	0.865	0.791	1.051	0.912	0.765	1.72	0.624	1.627	0.408	1.079	1.019	1.07	1.755	1.54	0.498	0.773	0.706	0.253	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14711	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RKLLDDAQILLRRKRTA,KKCVRSSSLFPKTQLQRRR,RRVKVQAFHSMATLKRRCN	50-70	0.999	25-85	1.000	—	—	0.000	—	—	0.286	0.250	0.069	0.598	0.216	0.376	0.334	0.093	0.440	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011946	1.000	1.000	Hsc_gene_6692.t1	Hsc_gene_6692.t1	—	Q6F6B3.1 Protein TANC1 [Rattus norvegicus]	KAI1701556.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.850\|GO:0005575_0.824\|GO:0110165_0.815\|GO:0009987_0.683\|GO:0016020_0.637\|GO:0032501_0.574\|GO:0071944_0.552\|GO:0065007_0.543\|GO:0005886_0.534\|GO:0005622_0.533\|GO:0050789_0.521\|GO:0050794_0.510	IPR002110+1114-1147_1132-1212_1154-1183_1184-1214_1218-1247_1324-1398_1346-1377_1380-1414_1417-1480_1422-1451_1422-1454_1455-1484_1455-1487_1488-1517_1521-1550+\|IPR011990+1565-1742_1569-1740+\|IPR027417+503-551_507-1059+\|IPR036770+1113-1267_1128-1243_1302-1554_1314-1546+\|IPR050889+631-1608+	SM00248+1114-1147_1154-1183_1184-1214_1218-1247_1346-1377_1380-1414_1422-1451_1455-1484_1488-1517_1521-1550+	PF12796+1132-1212_1324-1398_1417-1480+Ankyrin_repeats_(3_copies)	—	PTHR24166+631-1608+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-256;1657-1700	2.000	257-1656;1701-1744	2xzt_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.832	190142.250	7.772	34.000	25.803	8.888	47.076	52.924	14.736	11.067	53.268

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1181.734	3469.619	1880.328	1116.392	1193.504	1700.330	1063.275	1241.806	202.171	643.989	454.639

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.112	-1.773	-0.644	—	0.526	-0.669	-0.558	—	—	—	—	—	—

No JSON data available for plots.

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