Hg_chrom8_TN10mRNA_15575
Organism: Heterodera glycines Gene Locus: chr8:5063162-5068670 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.344 | 0.849 | 0.479 | 0.769 | 1.217 | 1.092 | 0.7 | 1.826 | 0.406 | 0.905 | 0.891 | 2.028 | 1.183 | 1.014 | 1.242 | 2.086 | 0.765 | 0.553 | 0.624 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14713
|
— |
Hg_chrom8_TN10gene_14713
|
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PYVKRKR,LRRKRKKENARSSGNAHGHFRP
|
— | — |
4-36
|
0.997
|
— | — |
0.000
|
— | — |
0.942
|
0.106
|
0.016
|
0.224
|
0.030
|
0.012
|
0.036
|
0.022
|
0.043
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004747
|
1.000
|
2.000
|
Hsc_gene_6689.t1;Hsc_gene_6689.t2
|
— | — | — |
KAF7638078.1 BED-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR003656+1-51_2-44+|IPR036236+2-48+
|
SM00614+2-47+
|
PF02892+2-44+BED_zinc_finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-248
|
2.000
|
1-40;249-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
53647.080
|
8.955
|
19.000
|
25.558
|
10.345
|
52.738
|
47.262
|
15.619
|
9.939
|
54.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
616.786
|
1021.057
|
1697.756
|
776.235
|
513.487
|
694.161
|
558.059
|
1159.690
|
286.791
|
75.677
|
166.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
-0.533
|
-1.022
|
-0.627
|
0.450
|
-0.306
|
0.641
|
-0.916
|
— | — | — | — | — |
No JSON data available for plots.