Hg_chrom8_TN10mRNA_15577
Organism: Heterodera glycines Gene Locus: chr8:5069529-5071232 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.436 | 0.842 | 0.106 | 1.183 | 1.266 | 1.029 | 1.389 | 0.96 | 0.542 | 1.403 | 0.363 | 0.429 | 1.603 | 1.386 | 1.455 | 0.86 | 1.122 | 0.237 | 0.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14715
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.296
|
0.242
|
0.018
|
0.647
|
0.106
|
0.073
|
0.142
|
0.111
|
0.428
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011947
|
1.000
|
1.000
|
Hsc_gene_6685.t1
|
Hsc_gene_6685.t1
|
— | — |
KAI1701548.1 tau and MAP protein, tubulin-binding repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008017|GO:0015631
|
— |
IPR001084+92-121_108-120_152-181_153-181_182-211_183-211_198-210+|IPR027324+12-214+
|
— |
PF00418+92-121_153-181_183-211+Tau_and_MAP_protein,_tubulin-binding_repeat
|
— |
PTHR11501+12-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-324
|
0.000
|
— |
8org_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
35078.050
|
10.479
|
18.500
|
30.556
|
5.556
|
57.099
|
42.901
|
18.827
|
11.728
|
57.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
1293.826
|
1385.511
|
2110.049
|
1556.297
|
1295.916
|
946.449
|
1747.694
|
1774.400
|
356.715
|
1336.833
|
916.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.377
|
— |
-0.331
|
-0.296
|
-0.439
|
0.897
|
0.802
|
— | — | — | — | — | — |
No JSON data available for plots.