Hg_chrom8_TN10mRNA_15579
Organism: Heterodera glycines Gene Locus: chr8:5075771-5077163 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 0.799 | 0.902 | 0.658 | 0.954 | 0.783 | 0.818 | 0.763 | 1.357 | 0.928 | 2.024 | 1.796 | 1.272 | 0.587 | 1.091 | 0.709 | 1.251 | 1.214 | 0.587 | 0.786 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KNKKMGKKGAKKKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.327
|
0.216
|
0.027
|
0.695
|
0.173
|
0.079
|
0.147
|
0.001
|
0.123
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011948
|
1.000
|
1.000
|
Hsc_gene_6683.t1
|
Hsc_gene_6683.t1
|
— |
A8PJ38.1 Small ribosomal subunit protein eS1 [Brugia malayi]
|
KAI3415941.1 40S ribosomal protein S3a [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.873|GO:0110165_0.869|GO:0005622_0.676|GO:0005737_0.577|GO:0043226_0.564|GO:0043229_0.548
|
IPR001593+13-218_14-218+|IPR018281+59-71+|IPR027500+1-262+
|
SM01397+13-218+
|
PF01015+14-218+Ribosomal_S3Ae_family
|
— |
PTHR11830+1-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;241-262
|
1.000
|
13-240
|
7oyc_B2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
29594.630
|
10.416
|
23.000
|
30.916
|
9.542
|
50.000
|
50.000
|
20.229
|
10.687
|
46.947
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
13187.755
|
8146.516
|
9077.152
|
17982.982
|
17971.838
|
13123.635
|
9400.159
|
5390.337
|
15293.328
|
15816.700
|
15592.398
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.005
|
1.094
|
— |
-0.438
|
-0.471
|
-1.391
|
0.946
|
— | — | — | — | — |
No JSON data available for plots.