Hg_chrom8_TN10mRNA_15580
Organism: Heterodera glycines Gene Locus: chr8:5077636-5078140 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 1.057 | 0.472 | 1.343 | 1.082 | 1.499 | 1.082 | 0.974 | 0.722 | 0.79 | 1.181 | 3.438 | 1.804 | 1.124 | 1.988 | 0.278 | 0.958 | 0.394 | 0.5 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14718
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PMKKRRR,KKRRRKRH,RRTIAEQLETQPTNKKKEE
|
— | — |
50-90
|
0.961
|
— | — |
0.000
|
— | — |
0.100
|
0.472
|
0.055
|
0.095
|
0.092
|
0.026
|
0.086
|
0.026
|
0.095
|
0.981
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011949
|
1.000
|
1.000
|
Hsc_gene_6682.t1
|
Hsc_gene_6682.t1
|
— |
G5EFH1.1 Insulin-like peptide 17 [Caenorhabditis elegans]
|
KAH7731188.1 CBN-INS-17 protein [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.921|GO:0032501_0.786|GO:0032502_0.768|GO:0048856_0.768|GO:0007275_0.757|GO:0009791_0.681|GO:0002119_0.670|GO:0002164_0.670|GO:0040024_0.670
|
IPR036438+47-150+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
17546.390
|
10.562
|
14.500
|
28.571
|
10.390
|
46.753
|
53.247
|
19.481
|
9.091
|
44.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
142.870
|
88.202
|
202.402
|
89.874
|
47.021
|
62.760
|
96.409
|
149.875
|
164.485
|
225.488
|
199.344
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.971
|
— |
-1.063
|
-0.968
|
0.432
|
0.629
|
1.154
|
-0.496
|
— | — | — | — | — |
No JSON data available for plots.