Hg_chrom8_TN10mRNA_15581
Organism: Heterodera glycines Gene Locus: chr8:5079972-5083304 Feature type: polypeptideProtein Sequence
Length: 697
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.051 | 0.868 | 0.913 | 0.396 | 1.315 | 0.993 | 0.598 | 2.152 | 0.861 | 1.551 | 0.37 | 1.182 | 1.793 | 0.993 | 1.493 | 1.209 | 0.823 | 0.826 | 0.883 | 0.338 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14719
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.674
|
0.324
|
0.000
|
— |
0.455
|
0.176
|
0.008
|
0.329
|
0.804
|
0.312
|
0.285
|
0.370
|
0.252
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011950
|
1.000
|
1.000
|
Hsc_gene_6681.t1
|
Hsc_gene_6681.t1
|
— |
P34542.3 Uncharacterized protein R05D3.9 [Caenorhabditis elegans]
|
XP_024504249.1 Thioredoxin-like fold domain-containing protein [Strongyloides ratti];CEF65048.1 Thioredoxin-like fold domain-containing protein [Strongyloides ratti]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR040090+152-487+
|
— | — | — |
PTHR22699+152-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
692-697
|
1.000
|
1-691
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
78434.690
|
6.110
|
-7.000
|
26.973
|
13.056
|
48.063
|
51.937
|
14.060
|
12.912
|
48.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
750.132
|
692.198
|
790.498
|
643.065
|
878.924
|
1550.067
|
1377.883
|
1495.951
|
383.516
|
208.471
|
283.490
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.243
|
-0.189
|
0.419
|
0.833
|
-0.160
|
— | — | — | — | — | — | — |