SCN Proteipedia

Hg_chrom8_TN10mRNA_15582

Organism: Heterodera glycines Gene Locus: chr8:5084550-5088916 Feature type: polypeptide

Protein Sequence

Length: 952

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.696	1.368	1.146	0.761	2.083	1.724	0.35	0.788	0.98	1.405	1.305	1.359	0.584	0.384	1.736	0.93	0.895	0.573	0.242	0.433	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14720	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRK,PCAKRRK,KRKCWTDEQRRRVKH,RKHTSRTLEENKRLQK,KKASSYEANANKIKRL,RRRVKHLEDQGERLRRE,KRLEEEKSSLKRKLDRAKR	—	—	—	—	—	—	0.000	—	—	0.875	0.045	0.006	0.310	0.047	0.046	0.077	0.005	0.044	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011951	1.000	1.000	Hsc_gene_6680.t1	Hsc_gene_6680.t1	—	Q9VRP9.2 E3 ubiquitin-protein ligase Bre1 [Drosophila melanogaster]	KAI3415938.1 E3 ubiquitin-protein ligase BRE1B [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842\|GO:0046872	GO:0008150_0.926\|GO:0005575_0.842\|GO:0003674_0.824\|GO:0009987_0.734\|GO:0110165_0.732\|GO:0005622_0.694\|GO:0005488_0.672\|GO:0065007_0.663\|GO:0050789_0.655\|GO:0043226_0.636\|GO:0043229_0.611\|GO:0016020_0.610\|GO:0008152_0.598\|GO:0044238_0.598\|GO:0043170_0.577\|GO:0019222_0.545\|GO:0043227_0.534\|GO:0060255_0.533\|GO:0048518_0.526\|GO:0005634_0.520\|GO:0043231_0.520\|GO:0005515_0.514\|GO:0050794_0.509	IPR001841+899-937_899-938+\|IPR013083+880-952+\|IPR013956+50-951+\|IPR017907+914-923+\|IPR018957+899-937+	SM00184+899-937+	PF00097+899-937+Zinc_finger,_C3HC4_type_(RING_finger)	—	PTHR23163+50-951+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27;177-383;485-729	3.000	28-176;384-484;730-952	8guj_K	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	110610.350	5.760	-8.500	37.500	5.462	62.080	37.920	18.697	18.803	41.071

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	midnightblue	2015.882	2145.842	1693.700	1556.946	1645.620	1472.713	1777.450	1812.398	3099.024	1955.966	2445.848

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.571	-0.600	—	—	-0.146	0.283	0.195	—	—	—	—	—	—

No JSON data available for plots.

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