Hg_chrom8_TN10mRNA_15583
Organism: Heterodera glycines Gene Locus: chr8:5089177-5090320 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.069 | 0.47 | 0.396 | 1.054 | 2.137 | 0.547 | 0.862 | 1.66 | 0.854 | 0.74 | 0.845 | 1.357 | 1.326 | 1.056 | 1.642 | 0.754 | 0.827 | 0.221 | 1.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.462
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKIISRQEIIRQKRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.880
|
0.110
|
0.006
|
0.404
|
0.060
|
0.011
|
0.021
|
0.020
|
0.029
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011952
|
1.000
|
1.000
|
Hsc_gene_6679.t1
|
Hsc_gene_6679.t1
|
— | — |
KAI3415937.1 DAZ-associated protein 1 [Globodera pallida]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.916|GO:0110165_0.907|GO:0008150_0.867|GO:0005622_0.839|GO:0043226_0.741|GO:0016020_0.732|GO:0043229_0.730|GO:0003674_0.725|GO:0005488_0.697|GO:0009987_0.692|GO:0043227_0.645|GO:0043231_0.619|GO:0097159_0.584|GO:0003676_0.570|GO:0005737_0.556|GO:0065007_0.540|GO:0008152_0.532|GO:0043170_0.532|GO:0050789_0.531|GO:0044238_0.530|GO:0003723_0.510|GO:0006139_0.506
|
IPR000504+21-98_22-94_23-81+|IPR012677+8-102+|IPR035979+19-214+
|
SM00360+22-94+
|
PF00076+23-81+RNA_recognition_motif
|
— |
PTHR48033+17-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-348
|
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
39053.120
|
8.674
|
7.000
|
20.690
|
11.494
|
49.713
|
50.287
|
11.782
|
8.908
|
48.563
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
425.373
|
410.874
|
394.407
|
415.050
|
393.928
|
364.561
|
374.947
|
437.680
|
329.031
|
567.441
|
465.265
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.289
|
— |
0.182
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.