Hg_chrom8_TN10mRNA_15584
Organism: Heterodera glycines Gene Locus: chr8:5090480-5092790 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 0.773 | 0.93 | 1.411 | 0.98 | 0.918 | 0.944 | 1.535 | 1.478 | 1.382 | 1.163 | 1.053 | 1.492 | 0.934 | 1.305 | 0.95 | 0.419 | 0.659 | 1.18 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14722
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PSRKRKC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.212
|
0.083
|
0.625
|
0.187
|
0.075
|
0.089
|
0.050
|
0.029
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011953
|
1.000
|
1.000
|
Hsc_gene_6678.t1
|
Hsc_gene_6678.t1
|
— |
Q45EK7.1 Probable tRNA (uracil-O(2)-)-methyltransferase [Caenorhabditis elegans]
|
KAI1712674.1 adoMet-dependent methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168
|
GO:0005575_0.880|GO:0110165_0.880|GO:0005622_0.809|GO:0005737_0.751|GO:0005829_0.599|GO:0008150_0.575|GO:0016020_0.546|GO:0003674_0.515|GO:0043226_0.505|GO:0043229_0.501
|
IPR011671+3-391_9-102+|IPR029063+1-115_36-142+
|
— |
PF07757+9-102+Predicted_AdoMet-dependent_methyltransferase
|
— |
PTHR21210+3-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
44190.200
|
8.768
|
18.000
|
28.133
|
12.532
|
44.246
|
55.754
|
17.136
|
10.997
|
45.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
948.222
|
382.065
|
687.247
|
929.157
|
1094.444
|
862.732
|
959.764
|
684.986
|
1165.022
|
1174.558
|
1170.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
1.145
|
0.544
|
0.204
|
-0.328
|
— |
-0.439
|
0.629
|
— | — | — | — | — |
No JSON data available for plots.