Hg_chrom8_TN10mRNA_15585
Organism: Heterodera glycines Gene Locus: chr8:5093030-5094974 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.007 | 1.002 | 0.407 | 0.459 | 0.909 | 1.172 | 1.969 | 1.137 | 1.33 | 0.298 | 1.39 | 0.984 | 0.909 | 1.527 | 1.631 | 1.033 | 1.193 | 0.606 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14723
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.481
|
0.226
|
0.009
|
0.704
|
0.116
|
0.407
|
0.330
|
0.039
|
0.226
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011954
|
1.000
|
1.000
|
Hsc_gene_6677.t1
|
Hsc_gene_6677.t1
|
— |
Q9D4V7.1 Rab-like protein 3 [Mus musculus]
|
KAI1715443.1 ras of complex, roc, domain of DAPkinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.823|GO:0110165_0.817|GO:0008150_0.725|GO:0005622_0.719|GO:0009987_0.626|GO:0016020_0.623|GO:0043226_0.588|GO:0043229_0.574|GO:0005737_0.562|GO:0043227_0.545
|
IPR027417+1-195_4-179+
|
— |
PF08477+6-105+Ras_of_Complex,_Roc,_domain_of_DAPkinase
|
— |
PTHR24073+5-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
229-254
|
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
27358.960
|
8.756
|
8.000
|
21.654
|
9.449
|
47.244
|
52.756
|
13.386
|
8.268
|
57.480
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
880.279
|
1429.261
|
755.721
|
546.399
|
565.912
|
517.056
|
679.203
|
452.241
|
157.601
|
1878.348
|
1140.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.150
|
-1.524
|
-0.359
|
— | — |
0.404
|
-0.299
|
0.730
|
-3.696
|
— | — | — | — |
No JSON data available for plots.