SCN Proteipedia

Hg_chrom8_TN10mRNA_15586

Organism: Heterodera glycines Gene Locus: chr8:5095203-5102744 Feature type: polypeptide

Protein Sequence

Length: 704

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.727	1.288	0.93	0.686	0.876	1.166	0.659	1.562	1.673	1.401	0.925	1.755	1.499	0.628	1.044	1.075	0.838	0.818	0.983	0.752	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14724	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	0.974

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RYQKRRV	14-34	0.993	7-32	0.963	—	—	0.000	—	—	0.167	0.249	0.162	0.252	0.362	0.362	0.338	0.182	0.335	0.504

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004449	2.000	1.000	Hsc_gene_12024.t1	—	—	P91645.3 Voltage-dependent calcium channel type A subunit alpha-1 [Drosophila melanogaster]	KAI3415228.1 hypothetical protein GPALN_004840 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.952\|GO:0005575_0.917\|GO:0110165_0.906\|GO:0009987_0.901\|GO:0003674_0.859\|GO:0016020_0.855\|GO:0005622_0.830\|GO:0065007_0.802\|GO:0051179_0.794\|GO:0071944_0.787\|GO:0006810_0.785\|GO:0051234_0.785\|GO:0050789_0.782\|GO:0008152_0.778\|GO:0050896_0.773\|GO:0005886_0.772\|GO:0050794_0.761\|GO:0044237_0.754\|GO:0032501_0.749\|GO:0051716_0.745\|GO:0071840_0.744\|GO:0032502_0.739\|GO:0048856_0.739\|GO:0016043_0.738\|GO:0048518_0.716\|GO:0055085_0.715\|GO:0007275_0.713\|GO:0051641_0.712\|GO:0023052_0.709\|GO:0007154_0.708\|GO:0048731_0.706\|GO:0030154_0.704\|GO:0048522_0.704\|GO:0048869_0.704\|GO:0065008_0.703\|GO:0007165_0.702\|GO:0006996_0.700\|GO:0009628_0.698\|GO:0048468_0.698\|GO:0006811_0.697\|GO:0009056_0.697\|GO:0051649_0.697\|GO:0007399_0.695\|GO:0022414_0.695\|GO:0023051_0.695\|GO:0010646_0.694\|GO:0032879_0.694\|GO:0034220_0.694\|GO:0009605_0.692\|GO:0044085_0.692\|GO:0061024_0.691\|GO:0042592_0.690\|GO:0051049_0.690\|GO:0022008_0.689\|GO:0098660_0.689\|GO:0016192_0.688\|GO:0040007_0.688\|GO:0051239_0.688\|GO:0003008_0.687\|GO:0022607_0.687\|GO:0006812_0.686\|GO:0051128_0.685\|GO:0098655_0.685\|GO:0098662_0.685\|GO:0030001_0.684\|GO:0044248_0.684\|GO:0048699_0.684\|GO:0019725_0.683\|GO:0030182_0.683\|GO:0048666_0.683\|GO:0035556_0.682\|GO:0048589_0.682\|GO:0050793_0.682\|GO:0060341_0.681\|GO:0141124_0.681\|GO:0007267_0.680\|GO:0007268_0.680\|GO:0016050_0.680\|GO:0030054_0.680\|GO:0043933_0.680\|GO:0045202_0.680\|GO:0098916_0.680\|GO:0099536_0.680\|GO:0099537_0.680\|GO:0044057_0.679\|GO:0046903_0.679\|GO:0048609_0.678\|GO:0051130_0.678\|GO:0061025_0.678\|GO:0140352_0.678\|GO:2000026_0.678\|GO:0003013_0.677\|GO:0009314_0.677\|GO:0032940_0.677\|GO:0034330_0.677\|GO:0050877_0.677\|GO:0051240_0.677\|GO:0006914_0.676\|GO:0007600_0.676\|GO:0007610_0.676\|GO:0009416_0.676\|GO:0042391_0.676\|GO:0044087_0.676\|GO:0048284_0.676\|GO:0051046_0.676\|GO:0061919_0.676\|GO:0008015_0.675\|GO:0034329_0.675\|GO:0040008_0.675\|GO:0050804_0.675\|GO:0051094_0.675\|GO:0051606_0.675\|GO:0099177_0.675\|GO:0006816_0.674\|GO:0006836_0.674\|GO:0006906_0.674\|GO:0016236_0.674\|GO:0043269_0.674\|GO:0050808_0.674\|GO:0051960_0.674\|GO:0090174_0.674\|GO:1903530_0.674\|GO:0005215_0.673\|GO:0022857_0.673\|GO:0023061_0.673\|GO:0051962_0.673\|GO:0070588_0.673\|GO:0002027_0.670\|GO:0003015_0.670\|GO:0006887_0.670\|GO:0007204_0.670\|GO:0007269_0.670\|GO:0007416_0.670\|GO:0007528_0.670\|GO:0007601_0.670\|GO:0007617_0.670\|GO:0007619_0.670\|GO:0007626_0.670\|GO:0008016_0.670\|GO:0008049_0.670\|GO:0008344_0.670\|GO:0008582_0.670\|GO:0009581_0.670\|GO:0009582_0.670\|GO:0009583_0.670\|GO:0010522_0.670\|GO:0010524_0.670\|GO:0010959_0.670\|GO:0016057_0.670\|GO:0016322_0.670\|GO:0016545_0.670\|GO:0019098_0.670\|GO:0019722_0.670\|GO:0021700_0.670\|GO:0022411_0.670\|GO:0030534_0.670\|GO:0032984_0.670\|GO:0034762_0.670\|GO:0034764_0.670\|GO:0034765_0.670\|GO:0034767_0.670\|GO:0042044_0.670\|GO:0042045_0.670\|GO:0042551_0.670\|GO:0043270_0.670\|GO:0044089_0.670\|GO:0045433_0.670\|GO:0045887_0.670\|GO:0045927_0.670\|GO:0046928_0.670\|GO:0048065_0.670\|GO:0048469_0.670\|GO:0048638_0.670\|GO:0048639_0.670\|GO:0050803_0.670\|GO:0050807_0.670\|GO:0050906_0.670\|GO:0050908_0.670\|GO:0050953_0.670\|GO:0050962_0.670\|GO:0051050_0.670\|GO:0051124_0.670\|GO:0051588_0.670\|GO:0051924_0.670\|GO:0051928_0.670\|GO:0051963_0.670\|GO:0051965_0.670\|GO:0060047_0.670\|GO:0060179_0.670\|GO:0060402_0.670\|GO:0070050_0.670\|GO:0070633_0.670\|GO:0071695_0.670\|GO:0097352_0.670\|GO:0097553_0.670\|GO:0098793_0.670\|GO:0099500_0.670\|GO:0099643_0.670\|GO:0140029_0.670\|GO:1901888_0.670\|GO:1901890_0.670\|GO:1903169_0.670\|GO:1903522_0.670\|GO:1904062_0.670\|GO:1904064_0.670\|GO:1904396_0.670\|GO:1904398_0.670\|GO:1904427_0.670\|GO:0015075_0.665\|GO:0008324_0.662\|GO:0015267_0.662\|GO:0022803_0.662\|GO:0005216_0.661\|GO:0015318_0.660\|GO:0022836_0.657\|GO:0022890_0.657\|GO:0046873_0.657\|GO:0005261_0.656\|GO:0005244_0.650\|GO:0005245_0.650\|GO:0005262_0.650\|GO:0008331_0.650\|GO:0008332_0.650\|GO:0015085_0.650\|GO:0022832_0.650\|GO:0022843_0.650\|GO:0032991_0.622\|GO:0098590_0.588\|GO:0098796_0.571\|GO:0098797_0.549\|GO:0045177_0.548\|GO:0016324_0.546\|GO:1902495_0.545\|GO:1990351_0.545\|GO:0005891_0.540\|GO:0009925_0.540\|GO:0016323_0.540\|GO:0031594_0.540\|GO:0034702_0.540\|GO:0034703_0.540\|GO:0034704_0.540\|GO:0045178_0.540\|GO:0048786_0.540	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-704	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.736	79911.060	8.263	17.000	24.716	12.358	47.443	52.557	14.347	10.369	45.739

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4758.581	5488.052	6883.506	4829.493	3840.579	3833.060	2134.894	6971.262	4196.408	4928.667	4614.842

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.322	-0.403	-0.362	—	-0.838	0.759	-1.568	—	—	—	—	—

No JSON data available for plots.

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