Hg_chrom8_TN10mRNA_15587
Organism: Heterodera glycines Gene Locus: chr8:5102862-5107244 Feature type: polypeptideProtein Sequence
Length: 915
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 1.55 | 1.053 | 0.716 | 1.038 | 1.093 | 0.533 | 1.202 | 1.239 | 1.817 | 0.679 | 1.414 | 0.88 | 0.673 | 1.138 | 1.14 | 0.896 | 0.861 | 1.009 | 0.771 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14725
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
28-63
|
0.997
|
— | — |
0.000
|
— | — |
0.489
|
0.199
|
0.011
|
0.626
|
0.230
|
0.258
|
0.270
|
0.080
|
0.282
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011955
|
1.000
|
1.000
|
Hsc_gene_6676.t1
|
Hsc_gene_6676.t1
|
— |
Q2WF59.1 Zyg eleven-related protein 1 [Caenorhabditis elegans]
|
KAH7731193.1 Leucine Rich Repeat family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0008150_0.674|GO:0032991_0.576|GO:1902494_0.502
|
IPR011989+524-908+|IPR016024+541-891+|IPR032675+74-204_266-483+|IPR051341+67-887+
|
— |
PF22964+536-890+Protein_zer-1_homolog-like,_C-terminal_domain
|
G3DSA:1.25.10.10:FF:000638+504-906+Zyg_eleven-related_protein_1
|
PTHR12904+67-887+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;895-915
|
1.000
|
18-894
|
7ep5_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
103118.730
|
5.979
|
-7.000
|
24.481
|
9.508
|
48.852
|
51.148
|
12.459
|
12.022
|
48.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
2277.979
|
2779.451
|
2419.526
|
1828.551
|
2425.986
|
3331.869
|
3681.089
|
3261.995
|
1704.445
|
1289.650
|
1467.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.429
|
-0.741
|
-0.296
|
0.376
|
0.472
|
0.154
|
— |
0.318
|
— | — | — | — | — |
No JSON data available for plots.