Hg_chrom8_TN10mRNA_15588
Organism: Heterodera glycines Gene Locus: chr8:5108590-5111035 Feature type: polypeptideProtein Sequence
Length: 606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.269 | 1.612 | 1.05 | 1.081 | 1.238 | 1.692 | 0.57 | 2.31 | 0.843 | 0.825 | 1.525 | 1.165 | 0.779 | 0.603 | 1.246 | 1.485 | 0.893 | 0.775 | 0.254 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14726
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.405
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKAKMKSGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.911
|
0.048
|
0.002
|
0.237
|
0.021
|
0.015
|
0.024
|
0.012
|
0.078
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004749
|
1.000
|
2.000
|
Hsc_gene_6675.t1;Hsc_gene_6675.t2
|
Hsc_gene_6675.t1;Hsc_gene_6675.t2
|
— | — |
KAF7638087.1 C2H2-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+6-27_33-57_256-280_313-336_341-366+
|
SM00355+6-27_33-57_256-280_313-336_341-366+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
138-229;404-606
|
2.000
|
1-137;230-403
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
69900.030
|
9.024
|
32.000
|
33.993
|
10.891
|
63.366
|
36.634
|
20.792
|
13.201
|
47.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
midnightblue
|
1437.887
|
1086.869
|
1331.732
|
1234.610
|
1360.858
|
1169.020
|
1132.590
|
1429.514
|
2155.771
|
1394.481
|
1720.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.108
|
-0.204
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.