Hg_chrom8_TN10mRNA_15597
Organism: Heterodera glycines Gene Locus: chr8:5138661-5141131 Feature type: polypeptideProtein Sequence
Length: 523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 0.889 | 0.939 | 1.121 | 0.637 | 1.03 | 0.455 | 1.816 | 0.977 | 1.292 | 0.579 | 1.125 | 1.859 | 1.471 | 1.249 | 2.076 | 0.564 | 0.55 | 0.294 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14735
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.365
|
0.190
|
0.012
|
0.733
|
0.181
|
0.181
|
0.254
|
0.045
|
0.129
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002497
|
3.000
|
1.000
|
Hsc_gene_6667.t1
|
— | — |
Q9Y2K5.3 R3H domain-containing protein 2 [Homo sapiens]
|
KAI1717087.1 r3H domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0003674_0.639|GO:0005488_0.597|GO:0005575_0.564|GO:0110165_0.564|GO:0008150_0.509|GO:0005622_0.503
|
IPR001374+60-137_77-140_79-136+|IPR036867+49-164_54-156+|IPR051937+22-287+
|
SM00393+60-137+
|
PF01424+79-136+R3H_domain
|
— |
PTHR15672+22-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-523
|
1whr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
57895.620
|
8.067
|
14.500
|
22.562
|
12.811
|
48.375
|
51.625
|
13.576
|
8.987
|
53.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
19.842
|
48.832
|
37.804
|
24.228
|
22.472
|
25.829
|
22.694
|
18.791
|
15.419
|
0.000
|
6.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.599
|
-1.148
|
-0.532
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.